RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 Q9N2J8 555 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 CMAHPQ9Y471 501 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 EVPLQ92817 2033 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 RENP00797 406 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 SLC5A2P31639 672 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GCGRP47871 477 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 SOX2P48431 317 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ADAM15Q13444 863 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ZNF267Q14586 743 aaPredicted RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 PPP2R2DQ66LE6 453 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GTF2IRD2BQ6EKJ0 949 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ALKAL1Q6UXT8 129 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 NUP54Q7Z3B4 507 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GTF2IRD2Q86UP8 949 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 OTUB2Q96DC9 234 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 MCCC1Q96RQ3 725 aaPredicted RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 HDHD5Q9BXW7 423 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 B3GNT4Q9C0J1 378 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GNG8Q9UK08 70 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ACSL5Q9ULC5 683 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PRSS21Q9Y6M0 314 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 FAAHO00519 579 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 RHCEP18577 417 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 CXCR1P25024 350 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ADRA1AP35348 466 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 RAB33AQ14088 237 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 SELPLGQ14242 412 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 DHCR24Q15392 516 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PRRT3Q5FWE3 981 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 TMEM107Q6UX40 140 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 SHFQ7M4L6 423 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 IQCF1Q8N6M8 205 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GATSQ8NAP1 163 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 NUP43Q8NFH3 380 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 OR4K5Q8NGD3 323 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 OR8K3Q8NH51 312 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 DGAT2Q96PD7 388 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 HCN2Q9UL51 889 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GRIP1Q9Y3R0 1128 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 KNTC1P50748 2209 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 CCR7P32248 378 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PTGER1P34995 402 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 MAP3K8P41279 467 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PITPNAQ00169 270 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 FAM214AQ32MH5 1076 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ZCCHC12Q6PEW1 402 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 ZNF367Q7RTV3 350 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.13□□□□□ -0.47
USP53-209ENST00000514665 YIPF7Q8N8F6 280 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 LMNTD1Q8N9Z9 388 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 THEM6Q8WUY1 208 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 NAA50Q9GZZ1 169 aaKnown RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 POLMQ9NP87 494 aaPredicted RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 DCAF13Q9NV06 445 aaKnown RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 CLDND1Q9NY35 253 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 NLGN3Q9NZ94 848 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 EXTL2Q9UBQ6 330 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 GPR52Q9Y2T5 361 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 TRIM3O75382 744 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 ITGA10O75578 1167 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PYCR1P32322 319 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 NKX2-5P52952 324 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 UBXN2BQ14CS0 331 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 C4orf46Q504U0 113 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 MEDAGQ5VYS4 303 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 ZNF627Q7L945 461 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SPARTQ8N0X7 666 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 C16orf78Q8WTQ4 265 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 GATAD2BQ8WXI9 593 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 COQ8BQ96D53 544 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 LRIG1Q96JA1 1093 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 JSRP1Q96MG2 331 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 HRASLS2Q9NWW9 162 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 OR1A2Q9Y585 309 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PCDHGB5Q9Y5G0 923 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 ENPP4Q9Y6X5 453 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 INMT-MINDY4F8WBC2 141 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PDCD5O14737 125 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SMAD9O15198 467 aaKnown RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 PRODHO43272 600 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 DCKP27707 260 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PIN1Q13526 163 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 PGBD5Q8N414 524 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 OR52N2Q8NGI0 321 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SHKBP1Q8TBC3 707 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 GTF2H4Q92759 462 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 P2RY13Q9BPV8 354 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 LGR4Q9BXB1 951 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 OR8D2Q9GZM6 311 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 HCFC1R1Q9NWW0 138 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PLOD2O00469 737 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SLC10A3P09131 477 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 TACSTD2P09758 323 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 TACR1P25103 407 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 GRIA2P42262 883 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 GJA8P48165 433 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 MAB21L1Q13394 359 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 RGNQ15493 299 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 RUNDC3AQ59EK9 446 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 CHERPQ8IWX8 916 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms