RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CCDC80Q76M96 950 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 RAB43Q86YS6 212 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CAMKK1Q8N5S9 505 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 LMLNQ96KR4 655 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TSSK6Q9BXA6 273 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 LRG1P02750 347 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 SCG5P05408 212 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ELFN1P0C7U0 828 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TM4SF4P48230 202 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 RORCP51449 518 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZNF79Q15937 498 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZNF770Q6IQ21 691 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 BRAT1Q6PJG6 821 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 USP30Q70CQ3 517 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 KRT73Q86Y46 540 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 OR4D11Q8NGI4 311 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TIFAQ96CG3 184 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 REPS1Q96D71 796 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TMEM80Q96HE8 168 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZSCAN5AQ9BUG6 496 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 HMX1Q9NP08 348 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 NUFIP1Q9UHK0 495 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 DNMT3AQ9Y6K1 912 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 PCM1Q15154 2024 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 WASHC1A8K0Z3 465 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TYRP14679 529 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ZNF30P17039 623 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CSTF2P33240 577 aaKnown RBP eCLIP8.8□□□□□ -1
LIMCH1-215ENST00000512632 CRYBB2P43320 205 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 METAP1P53582 386 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CAV3P56539 151 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 C22orf42Q6IC83 251 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 WASH2PQ6VEQ5 465 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 FLCNQ8NFG4 579 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 EXOSC8Q96B26 276 aaKnown RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 TMCO6Q96DC7 493 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC6A18Q96N87 628 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 DEPDC7Q96QD5 511 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLX1AQ9BQ83 275 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 EFCAB11Q9BUY7 163 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 PRRG3Q9BZD7 231 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 MVB12BQ9H7P6 319 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TOR4AQ9NXH8 423 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 REV1Q9UBZ9 1251 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SSR3Q9UNL2 185 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ANAPC1Q9H1A4 1944 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 A0A075B6Q4 140 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 HEPACAM2A8MVW5 462 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 K7ESM1 405 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 MPZL2O60487 215 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TMCC2O75069 709 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CTSLP07711 333 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CTSAP10619 480 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 DGKGP49619 791 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC7A9P82251 487 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 LY6G5CQ5SRR4 150 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC39A11Q8N1S5 342 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SYT14Q8NB59 555 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC7A13Q8TCU3 470 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 XAGE5Q8WWM1 108 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC5A11Q8WWX8 675 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ZFYVE19Q96K21 471 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 F2RL3Q96RI0 385 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CCDC32Q9BV29 185 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SLC25A19Q9HC21 320 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SEMA3GQ9NS98 782 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 MEIOCA2RUB1 952 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 MYL12BO14950 172 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TGM5O43548 720 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ETV6P41212 452 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CNTN1Q12860 1018 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 HNRNPA0Q13151 305 aaKnown RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 PDE7AQ13946 482 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ERAP2Q6P179 960 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ADIPOR2Q86V24 386 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 PHC2Q8IXK0 858 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 UBASH3BQ8TF42 649 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 UCN3Q969E3 161 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CXorf40BQ96DE9 158 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TCEAL4Q96EI5 215 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 C1GALT1C1Q96EU7 318 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 DIRAS2Q96HU8 199 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ST6GAL2Q96JF0 529 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 FYTTD1Q96QD9 318 aaKnown RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 MALT1Q9UDY8 824 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 ENOPH1Q9UHY7 261 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 SPIN1Q9Y657 262 aaPredicted RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 V9GYH0 126 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 M0R3H8 397 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CCL16O15467 120 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 CAPN5O15484 640 aaPredicted RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 GUCY1B2O75343 617 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 H1F0P07305 194 aaKnown RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 CCR2P41597 374 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 PRLHRP49683 370 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 RHAGQ02094 409 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 TEKQ02763 1124 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 GPR50Q13585 617 aa8.8□□□□□ -1
LIMCH1-215ENST00000512632 COL9A2Q14055 689 aaPredicted RBP8.8□□□□□ -1
LIMCH1-215ENST00000512632 NDUFA5Q16718 116 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms