RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 SCARB2Q14108 478 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 DOC2BQ14184 412 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 HEPACAMQ14CZ8 416 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 LIPJQ5W064 366 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TRIM40Q6P9F5 258 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 ANKS3Q6ZW76 656 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 PDZD3Q86UT5 571 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 OR2M2Q96R28 347 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 UBL7Q96S82 380 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 COPS8Q99627 209 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TCF25Q9BQ70 676 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TSSK6Q9BXA6 273 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 NMNAT1Q9HAN9 279 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 BPIFA1Q9NP55 256 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 MRPS18AQ9NVS2 196 aaKnown RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TRBV5-4A0A0C4DH59 114 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TRDV1A0A1B0GX56 115 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 A0A1W2PQ45 241 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 RPS10-NUDT3A0A1W2PQS6 291 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 A0A1W2PQY0 241 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TSC22D2O75157 780 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 B3GAT3O94766 335 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 WDPCPO95876 746 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 TRBC1P01850 177 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 IFNW1P05000 195 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 NUDT7P0C024 238 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 GBX2P52951 348 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 KIAA1211LQ6NV74 962 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 PRICKLE2Q7Z3G6 844 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 ASPGQ86U10 573 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 ADGRF3Q8IZF5 1079 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 NAGSQ8N159 534 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 UBE2J2Q8N2K1 259 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 FAM26EQ8N5C1 309 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 UFD1Q92890 307 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 PAWRQ96IZ0 340 aaKnown RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 BHLHE41Q9C0J9 482 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-208ENST00000506368 HEXA-AS1Q9H8Q6 139 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 GALNT9Q9HCQ5 603 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 ARL15Q9NXU5 204 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 ZNF224Q9NZL3 707 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 MARCH2Q9P0N8 246 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 CACNG4Q9UBN1 327 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 VPS29Q9UBQ0 182 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 KIF25Q9UIL4 384 aa15.16■□□□□ 0.02
SCLT1-208ENST00000506368 GASTP01350 101 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 F11P03951 625 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SRCP12931 536 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ATF6P18850 670 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 GALP22466 123 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 AQP1P29972 269 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 RGRP47804 291 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SLC6A12P48065 614 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 EPHA4P54764 986 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 GPR33Q49SQ1 333 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ZNF648Q5T619 568 aaPredicted RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 OR10Z1Q8NGY1 313 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 OTULINQ96BN8 352 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SUSD3Q96L08 255 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 TEFMQ96QE5 360 aaKnown RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 POLDIP3Q9BY77 421 aaKnown RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 GPR63Q9BZJ6 419 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ANGPT4Q9Y264 503 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 RWDD3Q9Y3V2 267 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 TRAV19A0A0A6YYK7 116 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ISM1B1AKI9 464 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 M0R129 80 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SLC16A5O15375 505 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 LZTS3O60299 673 aaPredicted RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 HIST1H2AGP0C0S8 130 aaPredicted RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 LAMP1P11279 417 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 PEPDP12955 493 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 HIST1H2ADP20671 130 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ZP3P21754 424 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SOX9P48436 509 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 TGM4P49221 684 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 RAG2P55895 527 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SP140Q13342 867 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 PCM1Q15154 2024 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ARSKQ6UWY0 536 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 C16orf62Q7Z3J2 963 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SCN4BQ8IWT1 228 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 PCSK9Q8NBP7 692 aaKnown RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 PHF21AQ96BD5 680 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SCMH1Q96GD3 660 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 TOE1Q96GM8 510 aaKnown RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 HIST1H2AHQ96KK5 128 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 HIST1H2AJQ99878 128 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 H2AFJQ9BTM1 129 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SLC12A9Q9BXP2 914 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 BRF2Q9HAW0 419 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 ZFP64Q9NPA5 681 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 MED9Q9NWA0 146 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 COPZ2Q9P299 210 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 SF3B6Q9Y3B4 125 aaKnown RBP15.15■□□□□ 0.02
SCLT1-208ENST00000506368 MAB21L2Q9Y586 359 aa15.15■□□□□ 0.02
SCLT1-208ENST00000506368 FAAHO00519 579 aa15.14■□□□□ 0.01
SCLT1-208ENST00000506368 SH3BP5O60239 455 aa15.14■□□□□ 0.01
SCLT1-208ENST00000506368 HOXD4P09016 255 aaPredicted RBP15.14■□□□□ 0.01
SCLT1-208ENST00000506368 ACRV1P26436 265 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms