RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ATP6AP1Q15904 470 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ZIC1Q15915 447 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 EIF3MQ7L2H7 374 aaKnown RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 C6orf120Q7Z4R8 191 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ZDHHC21Q8IVQ6 265 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CLIP3Q96DZ5 547 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 SLC6A16Q9GZN6 736 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 MAP10Q9P2G4 905 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 PDP2Q9P2J9 529 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CD300AQ9UGN4 299 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TRPM6Q9BX84 2022 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TCRBV3S1A0A5B6 114 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 KRT87PA6NCN2 255 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 G3V2T6 193 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 LDOC1O95751 146 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 RPSAP08865 295 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 NCK1P16333 377 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 GRK6P43250 576 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SEPHS1P49903 392 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 KCNC4Q03721 635 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SLC48A1Q6P1K1 146 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 ZCCHC12Q6PEW1 402 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 NUP43Q8NFH3 380 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 FBXO27Q8NI29 283 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SUN3Q8TAQ9 357 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 PAIP1Q9H074 479 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 RAB33BQ9H082 229 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 Q9N2J8 555 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SCN3BQ9NY72 215 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 VAPAQ9P0L0 249 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 NCDNQ9UBB6 729 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SAMHD1Q9Y3Z3 626 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 F5P12259 2224 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 A0A1W2PPV9 198 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 EME2A4GXA9 379 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 AIFM1O95831 613 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 IL12AP29459 219 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 FEN1P39748 380 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 CLCN2P51788 898 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 RPP38P78345 283 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 PDE7AQ13946 482 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 TNFAIP8L2Q6P589 184 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 RANBP3LQ86VV4 465 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 GALNT12Q8IXK2 581 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 CLECL1Q8IZS7 167 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 PHF10Q8WUB8 498 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 CANT1Q8WVQ1 401 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SLC9A6Q92581 669 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 RIT1Q92963 219 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 VOPP1Q96AW1 172 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 ACTRT3Q9BYD9 372 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 POLR1BQ9H9Y6 1135 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 C2orf16Q68DN1 1984 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 A0A0G2JPF8 293 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 HNRNPCL2B2RXH8 293 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 HNRNPCL3B7ZW38 293 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 CPNE6O95741 557 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 CCNYL3P0C7X3 344 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 HNRNPCL4P0DMR1 293 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 BCKDHBP21953 392 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 KDELR2P33947 212 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 MSX2P35548 267 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 E2F1Q01094 437 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 TRA2AQ13595 282 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP54-215ENST00000497106 MINDY4Q4G0A6 757 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP54-215ENST00000497106 PRAMEF8Q5VWM4 474 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 PRAMEF7Q5VXH5 474 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 OGFOD3Q6PK18 319 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 ZNF761Q86XN6 746 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 OR52E4Q8NGH9 312 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 NFKBIDQ8NI38 313 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 UTP15Q8TED0 518 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 DAZLQ92904 295 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 INPP5KQ9BT40 448 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 FNDC11Q9BVV2 318 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 OLAHQ9NV23 265 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 C14orf105Q9NVL8 296 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 TAS2R7Q9NYW3 318 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 KLHL20Q9Y2M5 609 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 NAALAD2Q9Y3Q0 740 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 A0A0A6YYD5 115 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 H0YIG0 161 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 UGT2B17O75795 530 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 GPR75O95800 540 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 COPZ1P61923 177 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SPIBQ01892 262 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 FAM53BQ14153 422 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 NR1D2Q14995 579 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 ZNF528Q3MIS6 628 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 RIMKLAQ8IXN7 391 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 SLC22A18ASQ8N1D0 253 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 GOT1L1Q8NHS2 421 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 TRAPPC9Q96Q05 1148 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 PHF12Q96QT6 1004 aa7.93□□□□□ -1.14
USP54-215ENST00000497106 TCEAL2Q9H3H9 227 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 KAT8Q9H7Z6 458 aaKnown RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 PRMT8Q9NR22 394 aaPredicted RBP7.93□□□□□ -1.14
USP54-215ENST00000497106 CUTCQ9NTM9 273 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms