RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	OR4Q3	Q8NH05	313 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	VPS39	Q96JC1	886 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	HNRNPAB	Q99729	332 aa	Known RBP	4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	FERMT1	Q9BQL6	677 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	INPP5K	Q9BT40	448 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	TEX13B	Q9BXU2	312 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	LRRCC1	Q9C099	1032 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	UBQLN3	Q9H347	655 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	YY1AP1	Q9H869	796 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	MOB1A	Q9H8S9	216 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	IL1RAPL2	Q9NP60	686 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	TAS2R3	Q9NYW6	316 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	ACTR3B	Q9P1U1	418 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	ZNF107	Q9UII5	783 aa	Predicted RBP	4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	AUP1	Q9Y679	476 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	POMT1	Q9Y6A1	747 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	HCFC1	P51610	2035 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	CDC42BPA	Q5VT25	1732 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	SCAPER	Q9BY12	1400 aa		4.38	□□□□□ -1.71
SF3B1-212	ENST00000496458	ABCA7	Q8IZY2	2146 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	NEO1	Q92859	1461 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	ARAP3	Q8WWN8	1544 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	TIAM1	Q13009	1591 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	ZNF318	Q5VUA4	2279 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	LRRD1	A4D1F6	860 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458		A8MU10	97 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458		K7EPI3	171 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	ZNF263	O14978	683 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	ZNF354A	O60765	605 aa	Predicted RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	NOL3	O60936	208 aa	Known RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	PRDM1	O75626	825 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	HEXB	P07686	556 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	SFTPC	P11686	197 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	CAST	P20810	708 aa	Known RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	FCGR2B	P31994	310 aa	Predicted RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	FCGR2C	P31995	323 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	PRKCI	P41743	596 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	PRELP	P51888	382 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	SCN1B	Q07699	218 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	DMTN	Q08495	405 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	MAPK11	Q15759	364 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	C9orf66	Q5T8R8	295 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	TCEAL6	Q6IPX3	200 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	KLHL10	Q6JEL2	608 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	IRGC	Q6NXR0	463 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	MSANTD1	Q6ZTZ1	278 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	OTOA	Q7RTW8	1153 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	RABEPK	Q7Z6M1	372 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	TMEM110	Q86TL2	294 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	HDDC3	Q8N4P3	179 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	CSNK1G2-AS1	Q8NCQ2	148 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	MR1	Q95460	341 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	SYAP1	Q96A49	352 aa	Predicted RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	TSSK2	Q96PF2	358 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	RBM24	Q9BX46	236 aa	Known RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	NT5C3A	Q9H0P0	336 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	EXTL2	Q9UBQ6	330 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	NOCT	Q9UK39	431 aa	Known RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	AP1M2	Q9Y6Q5	423 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	DENND4B	O75064	1496 aa	Predicted RBP	4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	ADGRL1	O94910	1474 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	LRRC9	Q6ZRR7	1453 aa		4.37	□□□□□ -1.71
SF3B1-212	ENST00000496458	EHBP1L1	Q8N3D4	1523 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	GPATCH8	Q9UKJ3	1502 aa	Known RBP	4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	SUPT6H	Q7KZ85	1726 aa	Known RBP	4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458		A0A087WWV3	80 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	RGSL1	A5PLK6	1076 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	TRIM49B	A6NDI0	452 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	SERINC4	A6NH21	518 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	RTN2	O75298	545 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	SH3BGRL	O75368	114 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	LETM1	O95202	739 aa	Predicted RBP	4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	ANKRD34C	P0C6C1	535 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	CCDC159	P0C7I6	412 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	FAM58BP	P0C7Q3	252 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	CASQ1	P31415	396 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	CASP3	P42574	277 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	GSK3B	P49841	420 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	CAPZA1	P52907	286 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	CRYBA2	P53672	197 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	ITPK1	Q13572	414 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	NHSL2	Q5HYW2	709 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	AGAP7P	Q5VUJ5	663 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	PHLDB2	Q86SQ0	1253 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	TIGD4	Q8IY51	512 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	FGFRL1	Q8N441	504 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	DENND6B	Q8NEG7	585 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	RIT1	Q92963	219 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	NABP1	Q96AH0	204 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	MLPH	Q9BV36	600 aa	Predicted RBP	4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	WDR41	Q9HAD4	459 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	FANCF	Q9NPI8	374 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	ANO10	Q9NW15	660 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	IL19	Q9UHD0	177 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	FBXL5	Q9UKA1	691 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	PIN4	Q9Y237	131 aa	Known RBP	4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	KIF3A	Q9Y496	699 aa		4.36	□□□□□ -1.71
SF3B1-212	ENST00000496458	NCOA2	Q15596	1464 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms