RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PCNPQ8WW12 178 aaKnown RBP3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 GGHQ92820 318 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 SYAP1Q96A49 352 aaPredicted RBP3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 VPS39Q96JC1 886 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 ZNF350Q9GZX5 532 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 LIN28AQ9H9Z2 209 aaKnown RBP3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 TRPC4Q9UBN4 977 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 CTNNA3Q9UI47 895 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 KIF3AQ9Y496 699 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 SMAD5-AS1Q9Y6J3 95 aa3.95□□□□□ -1.78
HMGB1P38-201ENST00000490557 COL5A2P05997 1499 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ATAD2BQ9ULI0 1458 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 LRRD1A4D1F6 860 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 SHISA9B4DS77 424 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ANHXE9PGG2 379 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 CCSO14618 274 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 P2RX6O15547 441 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 NME6O75414 186 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 HEXBP07686 556 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 IL10P22301 178 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 GJB2P29033 226 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 CTNNB1P35222 781 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ETV5P41161 510 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 NT5C2P49902 561 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 GPC3P51654 580 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 SLC12A3P55017 1021 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ACY1Q03154 408 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 HSP90AA5PQ58FG0 334 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 TCTEX1D4Q5JR98 221 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 GLRA4Q5JXX5 417 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ZNF730Q6ZMV8 503 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 KCTD9Q7L273 389 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 TMEM126BQ8IUX1 230 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 PHC2Q8IXK0 858 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 PEX5LQ8IYB4 626 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ZBTB44Q8NCP5 570 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 CCDC197Q8NCU1 140 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 IPMKQ8NFU5 416 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 SAP25Q8TEE9 199 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 C11orf52Q96A22 123 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 CFAP36Q96G28 342 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 TAAR6Q96RI8 345 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ZNF577Q9BSK1 485 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 KRT23Q9C075 422 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ADNPQ9H2P0 1102 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 CHMP4BQ9H444 224 aaKnown RBP3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 AKIRIN1Q9H9L7 192 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 DEPPQ9NTK1 212 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ACTR3BQ9P1U1 418 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 UBQLN2Q9UHD9 624 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 TEKT2Q9UIF3 430 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 ERVK-19Q9WJR5 959 aa3.94□□□□□ -1.78
HMGB1P38-201ENST00000490557 COL2A1P02458 1487 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 RNF103-CHMP3A0A140T963 221 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 A0A1B0GTH9 108 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 IGLON5A6NGN9 336 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 SERINC4A6NH21 518 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 FBP2O00757 339 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 GALR3O60755 368 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 HPP00738 406 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 HOXD4P09016 255 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 UROSP10746 265 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 ODC1P11926 461 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 ANPEPP15144 967 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 LMO2P25791 158 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 SLC1A6P48664 564 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 SH3BGRP55822 239 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 KCNK10P57789 538 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 YBEYP58557 167 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 ZFP36L1Q07352 338 aaKnown RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 TMED1Q13445 227 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 FASTKQ14296 549 aaKnown RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 IFI44LQ53G44 452 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 IRGCQ6NXR0 463 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 NHLRC1Q6VVB1 395 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 CYP4V2Q6ZWL3 525 aaPredicted RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 TMUB2Q71RG4 321 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 TIPARPQ7Z3E1 657 aaKnown RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 ASPGQ86U10 573 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 CARM1Q86X55 608 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 CDC20BQ86Y33 519 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 C4orf32Q8N8J7 132 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 TCP11Q8WWU5 503 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 ERGIC2Q96RQ1 377 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 DCTN5Q9BTE1 182 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 CACNG6Q9BXT2 260 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 GNB4Q9HAV0 340 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 IL1RAPL2Q9NP60 686 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 FANCFQ9NPI8 374 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 RPS10P5Q9NQ39 176 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 SPG21Q9NZD8 308 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 CNIH4Q9P003 139 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 THYN1Q9P016 225 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 STYXL1Q9Y6J8 313 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 SPAG9O60271 1321 aaKnown RBP3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 UMODL1Q5DID0 1318 aa3.93□□□□□ -1.78
HMGB1P38-201ENST00000490557 A0A1W2PPR1 153 aa3.92□□□□□ -1.78
HMGB1P38-201ENST00000490557 A0A1W2PRV1 198 aa3.92□□□□□ -1.78
HMGB1P38-201ENST00000490557 RGSL1A5PLK6 1076 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms