RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TCTN3Q6NUS6 607 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 PNCKQ6P2M8 343 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 BCDIN3DQ7Z5W3 292 aaKnown RBP17.06■□□□□ 0.32
VIM-206ENST00000487938 OR4D11Q8NGI4 311 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 APOBEC4Q8WW27 367 aaKnown RBP17.06■□□□□ 0.32
VIM-206ENST00000487938 NEURL3Q96EH8 262 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 PRAP1Q96NZ9 151 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 SP140LQ9H930 580 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 DNAJC27Q9NZQ0 273 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 CCDC59Q9P031 241 aaKnown RBP17.06■□□□□ 0.32
VIM-206ENST00000487938 REV1Q9UBZ9 1251 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 KCND3Q9UK17 655 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 KIAA1549LQ6ZVL6 1849 aa17.06■□□□□ 0.32
VIM-206ENST00000487938 A0A0G2JN53 185 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 SH3D21A4FU49 640 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 SAGE2PA6NJ88 616 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 TLR4O00206 839 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 PDPK1O15530 556 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 KELP23276 732 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 VIPR2P41587 438 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 CDC20Q12834 499 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 SSX1Q16384 188 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 ATCAYQ86WG3 371 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 C17orf64Q86WR6 236 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 OR5P2Q8WZ92 322 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 UCK2Q9BZX2 261 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 CLEC2DQ9UHP7 191 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 ENOPH1Q9UHY7 261 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 GPR34Q9UPC5 381 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 TCF20Q9UGU0 1960 aaKnown RBP17.05■□□□□ 0.32
VIM-206ENST00000487938 H3BN98 237 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 CTDSP2O14595 271 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 KCNK2O95069 426 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 TPTEP56180 551 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 ZNF45Q02386 682 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 DCST1Q5T197 706 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.05■□□□□ 0.32
VIM-206ENST00000487938 OLIG3Q7RTU3 272 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 SZRD1Q7Z422 152 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 HMGN2P46Q86SG4 172 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 SLC30A8Q8IWU4 369 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 C9orf43Q8TAL5 461 aaPredicted RBP17.05■□□□□ 0.32
VIM-206ENST00000487938 POF1BQ8WVV4 589 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 OR8D1Q8WZ84 308 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 RSPRY1Q96DX4 576 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 ZNF514Q96K75 400 aaPredicted RBP17.05■□□□□ 0.32
VIM-206ENST00000487938 CNOT2Q9NZN8 540 aaKnown RBP17.05■□□□□ 0.32
VIM-206ENST00000487938 A3GALT2U3KPV4 340 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 CHD7Q9P2D1 2997 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 PTPRSQ13332 1948 aa17.05■□□□□ 0.32
VIM-206ENST00000487938 WASHC1A8K0Z3 465 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 ANHXE9PGG2 379 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 CCRL2O00421 344 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 HMGN4O00479 90 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 SLC9A3R1O14745 358 aaPredicted RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 MPZL2O60487 215 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 TPST2O60704 377 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 GPX5O75715 221 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 OSMP13725 252 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 ELAVL4P26378 380 aaKnown RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 PRKCDQ05655 676 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 CNTN1Q12860 1018 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 SELENBP1Q13228 472 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 WASH2PQ6VEQ5 465 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 AMZ2Q86W34 360 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 MMAAQ8IVH4 418 aaKnown RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 CELF5Q8N6W0 485 aaKnown RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 AMER3Q8N944 861 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 PAWRQ96IZ0 340 aaKnown RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 CNPPD1Q9BV87 410 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 MS4A8Q9BY19 250 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 CPNE5Q9HCH3 593 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 A4GALTQ9NPC4 353 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 SIRT3Q9NTG7 399 aaPredicted RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 UGT2A1Q9Y4X1 527 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 IRAK3Q9Y616 596 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 OTOL1A6NHN0 477 aaPredicted RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 SOX3P41225 446 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 UAP1L1Q3KQV9 507 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 PDZD3Q86UT5 571 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 OTUB1Q96FW1 271 aaPredicted RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 ABHD8Q96I13 439 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 LGR4Q9BXB1 951 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 NUAK2Q9H093 628 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 SLC25A19Q9HC21 320 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 EXOSC4Q9NPD3 245 aaKnown RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 TEX10Q9NXF1 929 aaPredicted RBP17.04■□□□□ 0.32
VIM-206ENST00000487938 PEX16Q9Y5Y5 336 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 DSPPQ9NZW4 1301 aa17.04■□□□□ 0.32
VIM-206ENST00000487938 ARRDC5A6NEK1 342 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 CAPN5O15484 640 aaPredicted RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 MED26O95402 600 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SERPIND1P05546 499 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PTGER1P34995 402 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SOX6P35712 828 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 MAGEA8P43361 318 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SLC15A1P46059 708 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 DPTQ07507 201 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 HEPACAMQ14CZ8 416 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SYPL1Q16563 259 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms