RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CACNG1Q06432 222 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CALCOCO2Q13137 446 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 NFATC2Q13469 925 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 TMEM132DQ14C87 1099 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 FASTKD3Q14CZ7 662 aaKnown RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 SUSD4Q5VX71 490 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 FAM173BQ6P4H8 233 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 KIF6Q6ZMV9 814 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 FRRS1Q6ZNA5 592 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 ANKRD33Q7Z3H0 272 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 ADCK2Q7Z695 626 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 PHLDB2Q86SQ0 1253 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 IQCKQ8N0W5 287 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 GPC2Q8N158 579 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 SPATA4Q8NEY3 305 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CTNNBL1Q8WYA6 563 aaPredicted RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 DHTKD1Q96HY7 919 aaPredicted RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 FER1L6-AS2Q96M78 137 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 DMAP1Q9NPF5 467 aaPredicted RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 AATFQ9NY61 560 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP40-213ENST00000483216 BAIAP2L1Q9UHR4 511 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 UTP11Q9Y3A2 253 aaKnown RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 SELENOKQ9Y6D0 94 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 LAMB4A4D0S4 1761 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 GRIN2DO15399 1336 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 MYH14Q7Z406 1995 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 E7EWF7 191 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 SOCS3O14543 225 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 DEXIO95424 95 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 GNA14O95837 355 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 AGTP01019 485 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 CCDC166P0CW27 439 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 PCP11498 1178 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 EPORP19235 508 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 SP100P23497 879 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 PAX7P23759 505 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 ALDH1B1P30837 517 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 HNRNPH3P31942 346 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 CTNNA1P35221 906 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 PCK1P35558 622 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 TMEM50BP56557 158 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 SLC39A6Q13433 755 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 TRA2AQ13595 282 aaKnown RBP eCLIP4.98□□□□□ -1.61
USP40-213ENST00000483216 CDC37Q16543 378 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 RBBP7Q16576 425 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 PARP6Q2NL67 630 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 MOGAT2Q3SYC2 334 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 USH1GQ495M9 461 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 TAF1BQ53T94 588 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 ZNF658Q5TYW1 1059 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 SLC24A5Q71RS6 500 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 BZW1Q7L1Q6 419 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 ABI3BPQ7Z7G0 1075 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 AMIGO1Q86WK6 493 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 CCDC60Q8IWA6 550 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 LRRC43Q8N309 656 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 NME8Q8N427 588 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 STKLD1Q8NE28 680 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 OPTNQ96CV9 577 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 FAM218AQ96MZ4 157 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 BTBD9Q96Q07 612 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 NDNQ99608 321 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 CCDC77Q9BR77 488 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 CENPKQ9BS16 269 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 KATNB1Q9BVA0 655 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 GTPBP2Q9BX10 602 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 ROPN1BQ9BZX4 212 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 RNF41Q9H4P4 317 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 EGLN3Q9H6Z9 239 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 ROPN1Q9HAT0 212 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 TMBIM4Q9HC24 238 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 RAVER2Q9HCJ3 691 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 GDF3Q9NR23 364 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.98□□□□□ -1.61
USP40-213ENST00000483216 TEX10Q9NXF1 929 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 MTRF1LQ9UGC7 380 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 PAIP2BQ9ULR5 123 aaKnown RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 SNX7Q9UNH6 387 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 COL2A1P02458 1487 aaPredicted RBP4.98□□□□□ -1.61
USP40-213ENST00000483216 BCL9LQ86UU0 1499 aa4.98□□□□□ -1.61
USP40-213ENST00000483216 ATRNO75882 1429 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 COL22A1Q8NFW1 1626 aaPredicted RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 TCHHQ07283 1943 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 GLI3P10071 1580 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 LOC105371242A0A075B767 164 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 IGKV3D-20A0A0C4DH25 116 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TRBV4-1A0A0J9YWV2 114 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 KLF18A0A0U1RQI7 1052 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 ANXA2P2A6NMY6 339 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 BTNL10A8MVZ5 291 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 POLR2DO15514 142 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 RNF113AO15541 343 aaKnown RBP4.97□□□□□ -1.61
USP40-213ENST00000483216 PPIP5K2O43314 1243 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 DCTN3O75935 186 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 IDO1P14902 403 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 TCF4P15884 667 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 ACADVLP49748 655 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 RGS7P49802 495 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 MFAP3P55082 362 aa4.97□□□□□ -1.61
USP40-213ENST00000483216 DCDC1P59894 354 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms