RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 IGSF5Q9NSI5 407 aa18.29■□□□□ 0.52
COL9A3-210ENST00000472880 MS4A12Q9NXJ0 267 aa18.29■□□□□ 0.52
COL9A3-210ENST00000472880 PHF11Q9UIL8 331 aa18.29■□□□□ 0.52
COL9A3-210ENST00000472880 ITGB1BP2Q9UKP3 347 aa18.29■□□□□ 0.52
COL9A3-210ENST00000472880 GLSO94925 669 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-210ENST00000472880 CAPN3P20807 821 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 MAGEA4P43358 317 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 MAGEA5P43359 124 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 NR0B1P51843 470 aaKnown RBP18.28■□□□□ 0.52
COL9A3-210ENST00000472880 PHEXP78562 749 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 IGLV3-21P80748 117 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-210ENST00000472880 PCDH1Q08174 1060 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 SLAMF1Q13291 335 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 EMC4Q5J8M3 183 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 DEPDC1Q5TB30 811 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 ACAD11Q709F0 780 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 OR4N5Q8IXE1 308 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 TMEM251Q8N6I4 163 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 TEX9Q8N6V9 391 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 HUS1BQ8NHY5 278 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 SLC22A8Q8TCC7 542 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 FBXO25Q8TCJ0 367 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 RGMAQ96B86 450 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 SORBS1Q9BX66 1292 aaKnown RBP18.28■□□□□ 0.52
COL9A3-210ENST00000472880 RPF2Q9H7B2 306 aaKnown RBP18.28■□□□□ 0.52
COL9A3-210ENST00000472880 IL1RL2Q9HB29 575 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 MCCC2Q9HCC0 563 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 DMRT3Q9NQL9 472 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 ACOT9Q9Y305 439 aa18.28■□□□□ 0.52
COL9A3-210ENST00000472880 NKX2-6A6NCS4 301 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 OR14I1A6ND48 311 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 FIGNL2A6NMB9 653 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 BCKDKO14874 412 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 ZNF354AO60765 605 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 CCL3P10147 92 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 TLX1P31314 330 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 BUD31P41223 144 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 PIK3CBP42338 1070 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 DNASE1L1P49184 302 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 NUP107P57740 925 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 KRTAP10-9P60411 292 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 TNFRSF17Q02223 184 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 PMPCAQ10713 525 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 ASPHQ12797 758 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 MPEG1Q2M385 716 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 GXYLT1Q4G148 440 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 CCDC91Q7Z6B0 441 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 GPR180Q86V85 440 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 RNF175Q8N4F7 328 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 LILRB4Q8NHJ6 448 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 NUBPLQ8TB37 319 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 KCTD4Q8WVF5 259 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 NXNL1Q96CM4 212 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 RBM18Q96H35 190 aaKnown RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 SENP5Q96HI0 755 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 TREX2Q9BQ50 279 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-210ENST00000472880 ACTR8Q9H981 624 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 KCNJ16Q9NPI9 418 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 PNPLA3Q9NST1 481 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 LIPGQ9Y5X9 500 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 DCHS2Q6V1P9 2916 aa18.27■□□□□ 0.52
COL9A3-210ENST00000472880 A0A087X1B8 175 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 FOXO6A8MYZ6 492 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 PLPP1O14494 284 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 IGHG3P01860 377 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 GFAPP14136 432 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 ALOX15P16050 662 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 ACVR2AP27037 513 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 FOLH1Q04609 750 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 BIKQ13323 160 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 SETDB1Q15047 1291 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 FAM83EQ2M2I3 478 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 CDH24Q86UP0 819 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 CCDC71Q8IV32 467 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 C9orf40Q8IXQ3 194 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 ZCCHC7Q8N3Z6 543 aaKnown RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 OR5M9Q8NGP3 310 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 RHEBL1Q8TAI7 183 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 TANKQ92844 425 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 REPS1Q96D71 796 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 FBXL20Q96IG2 436 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 C16orf45Q96MC5 204 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 MTERF1Q99551 399 aaKnown RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 CNPPD1Q9BV87 410 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.26■□□□□ 0.512e-6■■■□□ 15.8
COL9A3-210ENST00000472880 TUBA8Q9NY65 449 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-210ENST00000472880 ATG4BQ9Y4P1 393 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 PCDHGA11Q9Y5H2 935 aa18.26■□□□□ 0.51
COL9A3-210ENST00000472880 ADGRG4Q8IZF6 3080 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 IGKV3-11P04433 115 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 MTHFD2P13995 350 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 HNRNPH2P55795 449 aaKnown RBP18.25■□□□□ 0.51
COL9A3-210ENST00000472880 IRF9Q00978 393 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 PIGGQ5H8A4 983 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 LIPJQ5W064 366 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 C18orf63Q68DL7 685 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF585AQ6P3V2 769 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 ZDHHC24Q6UX98 284 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 TRILQ7L0X0 811 aa18.25■□□□□ 0.51
COL9A3-210ENST00000472880 CENPLQ8N0S6 344 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms