RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 GKN3PP0CG01 181 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ATF4P18848 351 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 ZNF783Q6ZMS7 281 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 TRIM74Q86UV6 250 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 TOR1AIP2Q8NFQ8 470 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 OR8K3Q8NH51 312 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 GCDHQ92947 438 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 MAP3K3Q99759 626 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 TAS2R10Q9NYW0 307 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 KLHL21Q9UJP4 597 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 NENFQ9UMX5 172 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 PIRO00625 290 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 SLC19A2O60779 497 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 SOCS5O75159 536 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ACTL6BO94805 426 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ATG12O94817 140 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 UFM1P61960 85 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 MEF2AQ02078 507 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 C1orf61Q13536 156 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 RBM39Q14498 530 aaKnown RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 LRIT3Q3SXY7 679 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 SLC35F1Q5T1Q4 408 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 C3P1Q6ZMU1 363 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CDH20Q9HBT6 801 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 TUBA8Q9NY65 449 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 BORCS7-ASMTA0A0B4J1R7 106 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 VSTM2BA6NLU5 285 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 H7BY64 318 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 J3QRK9 145 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 M0QX08 132 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 GRIA2P42262 883 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 RNF144AP50876 292 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 MCCD1P59942 119 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 TRAM1Q15629 374 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 RPL13AP3Q6NVV1 102 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 PLEKHG7Q6ZR37 379 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ZNF584Q8IVC4 421 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CSNK1A1LQ8N752 337 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 OR14L1PQ8NHC6 308 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ZDHHC1Q8WTX9 485 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 LRCH3Q96II8 777 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 PRAP1Q96NZ9 151 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CCNL2Q96S94 520 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 PCDHAC1Q9H158 963 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 TPT1P8Q9HAU6 139 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CD320Q9NPF0 282 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 DLGAP4Q9Y2H0 992 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 DNAJC25-GNG10A0A024R161 153 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 PPM1BO75688 479 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CNOT4O95628 575 aaKnown RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 DIRAS3O95661 229 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ASGR2P07307 311 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 IL3P08700 152 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CHRM1P11229 460 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 UNGP13051 313 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 SERINC3Q13530 473 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 RCAN2Q14206 197 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 MELKQ14680 651 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 PON2Q15165 354 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ASTE1Q2TB18 679 aaPredicted RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 CYBRD1Q53TN4 286 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 LIPJQ5W064 366 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 GTF2IRD2BQ6EKJ0 949 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 REEP3Q6NUK4 255 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 XKRXQ6PP77 449 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 GTF2IRD2Q86UP8 949 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 CCDC116Q8IYX3 515 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 RCBTB1Q8NDN9 531 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 MFSD8Q8NHS3 518 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 FBRSL1Q9HCM7 1045 aaKnown RBP8.36□□□□□ -1.07
HPS4-209ENST00000466781 ADAMTS5Q9UNA0 930 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ABCG2Q9UNQ0 655 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 POMPQ9Y244 141 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 ZNF175Q9Y473 711 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 COL18A1P39060 1754 aa8.36□□□□□ -1.07
HPS4-209ENST00000466781 A8MVJ9 347 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 ANKRD28O15084 1053 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 FLRT2O43155 660 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 SFTPBP07988 381 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 S100PP25815 95 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 GDF5P43026 501 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 HNRNPKP61978 463 aaKnown RBP eCLIP8.35□□□□□ -1.07
HPS4-209ENST00000466781 GAS6Q14393 721 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 VMACQ2NL98 169 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 KIAA0319Q5VV43 1072 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 MRPL41Q8IXM3 137 aaKnown RBP8.35□□□□□ -1.07
HPS4-209ENST00000466781 TSACCQ96A04 125 aaPredicted RBP8.35□□□□□ -1.07
HPS4-209ENST00000466781 TAMM41Q96BW9 452 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 ASB9Q96DX5 294 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 URM1Q9BTM9 101 aaKnown RBP8.35□□□□□ -1.07
HPS4-209ENST00000466781 PAPOLGQ9BWT3 736 aaKnown RBP8.35□□□□□ -1.07
HPS4-209ENST00000466781 TM9SF3Q9HD45 589 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 AMBNQ9NP70 447 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 RHCGQ9UBD6 479 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 ZNF850A8MQ14 1090 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 SLC16A5O15375 505 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 TGM5O43548 720 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 ABCB7O75027 752 aa8.35□□□□□ -1.07
HPS4-209ENST00000466781 ZNF821O75541 412 aaPredicted RBP8.35□□□□□ -1.07
HPS4-209ENST00000466781 CREG1O75629 220 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms