RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 IQCGQ9H095 443 aaKnown RBP16.18■□□□□ 0.18
USP39-208ENST00000455732 C12orf65Q9H3J6 166 aaKnown RBP16.18■□□□□ 0.18
USP39-208ENST00000455732 NMRK1Q9NWW6 199 aa16.18■□□□□ 0.18
USP39-208ENST00000455732 ABI3Q9P2A4 366 aa16.18■□□□□ 0.18
USP39-208ENST00000455732 SLC12A4Q9UP95 1085 aa16.18■□□□□ 0.18
USP39-208ENST00000455732 DIDO1Q9BTC0 2240 aaKnown RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 A0A1W2PR48 441 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 A8MUA0 341 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 NR2F6P10588 404 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 TPP2P29144 1249 aaPredicted RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 HMOX2P30519 316 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 CLCN2P51788 898 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 TBL3Q12788 808 aaKnown RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 PCLAFQ15004 111 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 INAQ16352 499 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 EIF2S3LQ2VIR3 472 aaKnown RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 TCHHL1Q5QJ38 904 aaPredicted RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 C18orf63Q68DL7 685 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 FCRLBQ6BAA4 426 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 COMMD6Q7Z4G1 85 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 SRRM1Q8IYB3 904 aaKnown RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 GBP7Q8N8V2 638 aaPredicted RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 MORN4Q8NDC4 146 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 OR1N1Q8NGS0 311 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 METTL6Q8TCB7 284 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 GRHL3Q8TE85 626 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 PTPMT1Q8WUK0 201 aaPredicted RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 NCLNQ969V3 563 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 SENP1Q9P0U3 644 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 ZNF223Q9UK11 482 aaPredicted RBP16.17■□□□□ 0.18
USP39-208ENST00000455732 CLCA3PQ9Y6N3 262 aa16.17■□□□□ 0.18
USP39-208ENST00000455732 SERTM1A2A2V5 107 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 UBFD1O14562 309 aaKnown RBP16.16■□□□□ 0.18
USP39-208ENST00000455732 ULK1O75385 1050 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 AIFM1O95831 613 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 F10P00742 488 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 IFNA16P05015 189 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 GP1BBP13224 206 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 STT3AP46977 705 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 ZNF844Q08AG5 666 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 CFAP157Q5JU67 520 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 FHL5Q5TD97 284 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 RPS19BP1Q86WX3 136 aaKnown RBP16.16■□□□□ 0.18
USP39-208ENST00000455732 FAR1Q8WVX9 515 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 SMC6Q96SB8 1091 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 DEFB126Q9BYW3 111 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 WDR41Q9HAD4 459 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 MID1IP1Q9NPA3 183 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 AGPAT4Q9NRZ5 378 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 VPS29Q9UBQ0 182 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 PCDHGB6Q9Y5F9 930 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 DOPEY1Q5JWR5 2465 aa16.16■□□□□ 0.18
USP39-208ENST00000455732 TRBV11-1A0A0K0K1C0 115 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 ARHGAP10A1A4S6 786 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 GABRR3A8MPY1 467 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 MAN1A2O60476 641 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 SEMA7AO75326 666 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 PRKRAO75569 313 aaKnown RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 GBAP04062 536 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 KLK1P06870 262 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 HTR6P50406 440 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 MLF1P58340 268 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 PLIN5Q00G26 463 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 ID2Q02363 134 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 FOLH1Q04609 750 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 TUBA3CQ13748 450 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 KRT71Q3SY84 523 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 CCNYL2Q5T2Q4 361 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 FAM219BQ5XKK7 198 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 OR52E8Q6IFG1 317 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 TUBA3EQ6PEY2 450 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 C10orf107Q8IVU9 208 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 ST13P4Q8IZP2 240 aaPredicted RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 HBEGFQ99075 208 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 UTP23Q9BRU9 249 aaKnown RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 PELOQ9BRX2 385 aaKnown RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 TRMOQ9BU70 441 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 ACPTQ9BZG2 426 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP39-208ENST00000455732 CDCP1Q9H5V8 836 aa16.15■□□□□ 0.18
USP39-208ENST00000455732 TRIM45Q9H8W5 580 aaPredicted RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 TEX10Q9NXF1 929 aaPredicted RBP16.15■□□□□ 0.18
USP39-208ENST00000455732 ANKUB1A6NFN9 424 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 C17orf105B2RV13 164 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 PRAMEF2O60811 474 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 TRIM13O60858 407 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 GUCY1B2O75343 617 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 GPR75O95800 540 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 DDAH2O95865 285 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 COX7A2P14406 83 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 ALOX15P16050 662 aaPredicted RBP16.14■□□□□ 0.17
USP39-208ENST00000455732 GALNSP34059 522 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 TRHRP34981 398 aaPredicted RBP16.14■□□□□ 0.17
USP39-208ENST00000455732 MAPK12P53778 367 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 TRA2BP62995 288 aaKnown RBP16.14■□□□□ 0.17
USP39-208ENST00000455732 ASPHQ12797 758 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 NDUFAF5Q5TEU4 345 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 ZNF324BQ6AW86 544 aaPredicted RBP16.14■□□□□ 0.17
USP39-208ENST00000455732 ST6GALNAC3Q8NDV1 305 aa16.14■□□□□ 0.17
USP39-208ENST00000455732 MDS2Q8NDY4 140 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms