RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MED26O95402 600 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 CKMT1AP12532 417 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 CEBPBP17676 345 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 OPRD1P41143 372 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 SPDYE7PQ495Y7 208 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 FNDC3BQ53EP0 1204 aaKnown RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 LCTLQ6UWM7 567 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 DEF8Q6ZN54 512 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 C6orf120Q7Z4R8 191 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 WDR53Q7Z5U6 358 aaPredicted RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 C17orf64Q86WR6 236 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 SLC30A8Q8IWU4 369 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 PLA2G15Q8NCC3 412 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 OR5P2Q8WZ92 322 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 TFGQ92734 400 aaPredicted RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 EXOSC8Q96B26 276 aaKnown RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 OTUB2Q96DC9 234 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 ZNF514Q96K75 400 aaPredicted RBP11.22□□□□□ -0.61
CD44-209ENST00000433892 UCK2Q9BZX2 261 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 A4GALTQ9NPC4 353 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 REV1Q9UBZ9 1251 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 SLC23A2Q9UGH3 650 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 CLEC2DQ9UHP7 191 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 PEX16Q9Y5Y5 336 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 DSPPQ9NZW4 1301 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 H3BN98 237 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 CTDSP2O14595 271 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 GPX5O75715 221 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 ADAP00813 363 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 OSMP13725 252 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 ADRB3P13945 408 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 EPCAMP16422 314 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 KELP23276 732 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 ITGB7P26010 798 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 ELAVL4P26378 380 aaKnown RBP11.21□□□□□ -0.61
CD44-209ENST00000433892 PSMB5P28074 263 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 BSGP35613 385 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 SOX6P35712 828 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 SOX3P41225 446 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 SLC15A1P46059 708 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 C9orf64Q5T6V5 341 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 C19orf48Q6RUI8 117 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 BCDIN3DQ7Z5W3 292 aaKnown RBP11.21□□□□□ -0.61
CD44-209ENST00000433892 SFTPA1Q8IWL2 248 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 ST13P5Q8NFI4 369 aaPredicted RBP11.21□□□□□ -0.61
CD44-209ENST00000433892 OR4D11Q8NGI4 311 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 UCN3Q969E3 161 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 TRIM43Q96BQ3 446 aaPredicted RBP11.21□□□□□ -0.61
CD44-209ENST00000433892 NUAK2Q9H093 628 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 TM7SF3Q9NS93 570 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 GPR34Q9UPC5 381 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 PCDHGB6Q9Y5F9 930 aa11.21□□□□□ -0.61
CD44-209ENST00000433892 GOLGA4Q13439 2230 aaKnown RBP11.21□□□□□ -0.61
CD44-209ENST00000433892 H7BY64 318 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 HMGN4O00479 90 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 HAT1O14929 419 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SNPHO15079 494 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SLC6A11P48066 632 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 CNTN1Q12860 1018 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 HEPACAMQ14CZ8 416 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 TIMM50Q3ZCQ8 353 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SPANXN2Q5MJ10 180 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 DCST1Q5T197 706 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 DESI1Q6ICB0 168 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SZRD1Q7Z422 152 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 PDZD3Q86UT5 571 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SLC34A3Q8N130 599 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 CELF5Q8N6W0 485 aaKnown RBP11.21□□□□□ -0.62
CD44-209ENST00000433892 ZFYVE19Q96K21 471 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 PRAP1Q96NZ9 151 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 OPALINQ96PE5 141 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 CNPPD1Q9BV87 410 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 TAPBPLQ9BX59 468 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 MS4A8Q9BY19 250 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SLC25A19Q9HC21 320 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 EXOSC4Q9NPD3 245 aaKnown RBP11.21□□□□□ -0.62
CD44-209ENST00000433892 ZDHHC4Q9NPG8 344 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 SIRT3Q9NTG7 399 aaPredicted RBP11.21□□□□□ -0.62
CD44-209ENST00000433892 CFL2Q9Y281 166 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 TSC22D4Q9Y3Q8 395 aa11.21□□□□□ -0.62
CD44-209ENST00000433892 GPC6Q9Y625 555 aaPredicted RBP11.21□□□□□ -0.62
CD44-209ENST00000433892 TCF20Q9UGU0 1960 aaKnown RBP11.21□□□□□ -0.62
CD44-209ENST00000433892 A0A0G2JN53 185 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 ANHXE9PGG2 379 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SLC9A3R1O14745 358 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 CAPN5O15484 640 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 TIMP1P01033 207 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 H1F0P07305 194 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 DPTQ07507 201 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 ILKQ13418 452 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 ZNF765Q7L2R6 523 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 AMZ2Q86W34 360 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 DCUN1D3Q8IWE4 304 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 OR8D1Q8WZ84 308 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SMPDL3AQ92484 453 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 AIF1LQ9BQI0 150 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 RHBGQ9H310 441 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 HHATLQ9HCP6 504 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 LHX9Q9NQ69 397 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms