RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TRIM55Q9BYV6 548 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 RPF2Q9H7B2 306 aaKnown RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 PPIEQ9UNP9 301 aaKnown RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 BSNQ9UPA5 3926 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 BOD1L1Q8NFC6 3051 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 TNRC6AQ8NDV7 1962 aaKnown RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 IGHV3-20A0A0C4DH32 117 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 GLOD5A6NK44 160 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 CLDN4O14493 209 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 HDAC3O15379 428 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 LDB3O75112 727 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 SEC22BO75396 215 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 GPR75O95800 540 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 HPP00738 406 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 IL3P08700 152 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ANXA4P09525 319 aaPredicted RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 NR2F6P10588 404 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 BCKDHAP12694 445 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ACPPP15309 386 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ALOX15P16050 662 aaPredicted RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 SDC1P18827 310 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 TAS2R50P59544 299 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ID2Q02363 134 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 NR6A1Q15406 480 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 PDCD2Q16342 344 aaPredicted RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 IMPG1Q17R60 797 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 SMU1Q2TAY7 513 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 SFT2D3Q587I9 215 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 LARP4Q71RC2 724 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP40-205ENST00000430158 OR4N5Q8IXE1 308 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 TMEM102Q8N9M5 508 aaPredicted RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 LRRC8CQ8TDW0 803 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 MAELQ96JY0 434 aaKnown RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 EGLN2Q96KS0 407 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 PPP3R2Q96LZ3 170 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ZNF681Q96N22 645 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 EBPLQ9BY08 206 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ALOXE3Q9BYJ1 711 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 NUF2Q9BZD4 464 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 AKTIPQ9H8T0 292 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 MYNNQ9NPC7 610 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 ASIC5Q9NY37 505 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 FAM53CQ9NYF3 392 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 VTI1BQ9UEU0 232 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 MRPS33Q9Y291 106 aaKnown RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 MAN2B2Q9Y2E5 1009 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 WBP11Q9Y2W2 641 aaKnown RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 TMED5Q9Y3A6 229 aa11.63□□□□□ -0.55
USP40-205ENST00000430158 POLR3HQ9Y535 204 aaPredicted RBP11.63□□□□□ -0.55
USP40-205ENST00000430158 CPAMD8Q8IZJ3 1885 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 MYOCOSA0A1B0GUC4 107 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 ARGFXA6NJG6 315 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 PEX11AO75192 247 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 DRD2P14416 443 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 BUD31P41223 144 aaPredicted RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 GSTM5P46439 218 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 FOLH1Q04609 750 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 EMX2Q04743 252 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 EEF1A2Q05639 463 aaKnown RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 ZNF763Q0D2J5 394 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 CHAF1BQ13112 559 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 HSP90B2PQ58FF3 399 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 MFSD4BQ5TF39 518 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 VWA5B1Q5TIE3 1220 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 OR52E8Q6IFG1 317 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 SLC48A1Q6P1K1 146 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 DGAT2L6Q6ZPD8 337 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 LRRC34Q8IZ02 419 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 PIWIL2Q8TC59 973 aaKnown RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 PTPMT1Q8WUK0 201 aaPredicted RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 APOBEC4Q8WW27 367 aaKnown RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 METTL21AQ8WXB1 218 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 PSMF1Q92530 271 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 EXTL1Q92935 676 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 ING2Q9H160 280 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 CCDC134Q9H6E4 229 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 PRM3Q9NNZ6 103 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 TAS2R7Q9NYW3 318 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 C5AR2Q9P296 337 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 MARCOQ9UEW3 520 aaPredicted RBP11.62□□□□□ -0.55
USP40-205ENST00000430158 SPACA6W5XKT8 324 aa11.62□□□□□ -0.55
USP40-205ENST00000430158 KALRNO60229 2985 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 GNG14A0A1W2PPG7 69 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 ARHGAP10A1A4S6 786 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 C1orf226A1L170 272 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 SLCO1B7G3V0H7 640 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 PEX12O00623 359 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 TBX19O60806 448 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 EDF1O60869 148 aaKnown RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 GUCY1B2O75343 617 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 DNAJB5O75953 348 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 SEC24DO94855 1032 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 CELA2AP08217 269 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 TLX1P31314 330 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 STT3AP46977 705 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 OR4D2P58180 307 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 RPL38P63173 70 aaKnown RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 RHDQ02161 417 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 DUSP2Q05923 314 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 SLC13A2Q13183 592 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms