RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 WDR41Q9HAD4 459 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 ADAP2Q9NPF8 381 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 CCL27Q9Y4X3 112 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 POLR3HQ9Y535 204 aaPredicted RBP11.68□□□□□ -0.54
SKA1-203ENST00000417656 PIEZO2Q9H5I5 2752 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 GNG14A0A1W2PPG7 69 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 A0A1W2PS29 197 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 C2orf72A6NCS6 295 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 WASHC1A8K0Z3 465 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 HMGB1P1B2RPK0 211 aaPredicted RBP11.67□□□□□ -0.54
SKA1-203ENST00000417656 SLC28A1O00337 649 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 RGS14O43566 566 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 MYO1DO94832 1006 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 IFNA16P05015 189 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 IL3P08700 152 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 SFTPCP11686 197 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 PRPH2P23942 346 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 SLC1A6P48664 564 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 RPL38P63173 70 aaKnown RBP11.67□□□□□ -0.54
SKA1-203ENST00000417656 IGLV3-21P80748 117 aaPredicted RBP11.67□□□□□ -0.54
SKA1-203ENST00000417656 LSM11P83369 360 aaKnown RBP eCLIP11.67□□□□□ -0.54
SKA1-203ENST00000417656 STX3Q13277 289 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 SERTAD2Q14140 314 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 EXT1Q16394 746 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 TCTN3Q6NUS6 607 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 ASB18Q6ZVZ8 466 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 KIF2BQ8N4N8 673 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 SIRT6Q8N6T7 355 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 CDC26Q8NHZ8 85 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 TANKQ92844 425 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 TM4SF18Q96CE8 201 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 C11orf24Q96F05 449 aaPredicted RBP11.67□□□□□ -0.54
SKA1-203ENST00000417656 ALOXE3Q9BYJ1 711 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 SLC25A18Q9H1K4 315 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 ACBD3Q9H3P7 528 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 ZNF552Q9H707 407 aaPredicted RBP11.67□□□□□ -0.54
SKA1-203ENST00000417656 LRTM1Q9HBL6 345 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 C5AR2Q9P296 337 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 PTGFRNQ9P2B2 879 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 GIMAP2Q9UG22 337 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 PCDHA9Q9Y5H5 950 aa11.67□□□□□ -0.54
SKA1-203ENST00000417656 PGRMC2O15173 223 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 GUCY1B2O75343 617 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 C1QL1O75973 258 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 ALPPP05187 535 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 JUNP05412 331 aaKnown RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 ANXA4P09525 319 aaPredicted RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 ALDH9A1P49189 494 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 TAS2R50P59544 299 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 TRA2BP62995 288 aaKnown RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 PLIN5Q00G26 463 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 ZNF763Q0D2J5 394 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 NFATC3Q12968 1075 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 TERF2Q15554 542 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 ELAVL1Q15717 326 aaKnown RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 PDCD2Q16342 344 aaPredicted RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 XKR7Q5GH72 579 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 B3GNTL1Q67FW5 361 aaPredicted RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 GALNT18Q6P9A2 607 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 Q6ZSR9 355 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 NFAM1Q8NET5 270 aaPredicted RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 DNAJB14Q8TBM8 379 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 M1APQ8TC57 530 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 C16orf78Q8WTQ4 265 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 PSMF1Q92530 271 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 DGAT2Q96PD7 388 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 SMAD5Q99717 465 aaKnown RBP11.66□□□□□ -0.54
SKA1-203ENST00000417656 FAIM2Q9BWQ8 316 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 KCNK13Q9HB14 408 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 MMP25Q9NPA2 562 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 C1orf109Q9NX04 203 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 SIRT5Q9NXA8 310 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 HEY2Q9UBP5 337 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 DLGAP4Q9Y2H0 992 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 RAP2CQ9Y3L5 183 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 ZNF451Q9Y4E5 1061 aa11.66□□□□□ -0.54
SKA1-203ENST00000417656 TRBV11-1A0A0K0K1C0 115 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ATP6AP2A0A1C7CYW4 349 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 C1orf226A1L170 272 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 SYNDIG1LA6NDD5 238 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 EIF4E1BA6NMX2 242 aaKnown RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 C17orf105B2RV13 164 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 NPIPB8E9PQR5 432 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 LSM1O15116 133 aaKnown RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 SEC22BO75396 215 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ATP6AP2O75787 350 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 GPR75O95800 540 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ICAM2P13598 275 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ALOX15P16050 662 aaPredicted RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 SOX11P35716 441 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 STT3AP46977 705 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 CD97P48960 835 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 AP2B1P63010 937 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ZNF750Q32MQ0 723 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 GALNTL6Q49A17 601 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 CRB2Q5IJ48 1285 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 COLEC12Q5KU26 742 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 AGAP7PQ5VUJ5 663 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 FCRLBQ6BAA4 426 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 JMJD6Q6NYC1 403 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms