RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NUDT6P53370 316 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 DAB2P98082 770 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 RUNX1T1Q06455 604 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 MED22Q15528 200 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SMAD2Q15796 467 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 SHEQ5VZ18 495 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ERICH5Q6P6B1 374 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 PLET1Q6UQ28 207 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 MILR1Q7Z6M3 343 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 STK40Q8N2I9 435 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ANKRD53Q8N9V6 530 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 DUSP18Q8NEJ0 188 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 NLGN4YQ8NFZ3 816 aaPredicted RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 OR4K2Q8NGD2 314 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 OR10Z1Q8NGY1 313 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 KIAA1143Q96AT1 154 aaPredicted RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 FERD3LQ96RJ6 166 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 DCLRE1CQ96SD1 692 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 TM9SF2Q99805 663 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ELOVL2Q9NXB9 296 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 CNOT2Q9NZN8 540 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 ELF5Q9UKW6 265 aaPredicted RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 PCDHGB3Q9Y5G1 929 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 RAI2Q9Y5P3 530 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 KCNE2Q9Y6J6 123 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 PCP4L1A6NKN8 68 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SLC22A5O76082 557 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 CSF2P04141 144 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ICAM2P13598 275 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 LPOP22079 712 aaPredicted RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 ITGB7P26010 798 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 RAB25P57735 213 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SRP54P61011 504 aaKnown RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 HOXC5Q00444 222 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 GNA13Q14344 377 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 USP39Q53GS9 565 aaKnown RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 CTSL3PQ5NE16 218 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SUSD1Q6UWL2 747 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 FAM131AQ6UXB0 335 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 MSANTD1Q6ZTZ1 278 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 HDDC2Q7Z4H3 204 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 GLT6D1Q7Z4J2 308 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 VTCN1Q7Z7D3 282 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SIDT2Q8NBJ9 832 aaKnown RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 OR2AP1Q8NGE2 309 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ENKURQ8TC29 256 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 AP2M1Q96CW1 435 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 EID2BQ96D98 161 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 CNPPD1Q9BV87 410 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 DHRS7Q9Y394 339 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PCDHGA2Q9Y5H1 932 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 TBC1D3BA6NDS4 549 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ZNF670-ZNF695F2Z2N8 137 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 H7C0S8 307 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SCO1O75880 301 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 KAT7O95251 611 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 SCG5P05408 212 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ALPIP09923 528 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PRSS56P0CW18 603 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 MAB21L1Q13394 359 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ANGPT1Q15389 498 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 VMACQ2NL98 169 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ITPRIPL2Q3MIP1 535 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PDZK1Q5T2W1 519 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PTCRAQ6ISU1 281 aaPredicted RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 FAM124AQ86V42 546 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 CPA6Q8N4T0 437 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 B3GNT7Q8NFL0 401 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 HSH2DQ96JZ2 352 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 C7orf34Q96L11 122 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ZSCAN5AQ9BUG6 496 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PHF7Q9BWX1 381 aaPredicted RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 IPPKQ9H8X2 491 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 HHATLQ9HCP6 504 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 WASH6PQ9NQA3 447 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 TNFRSF10DQ9UBN6 386 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 PCDHB9Q9Y5E1 797 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 ALG5Q9Y673 324 aa10.62□□□□□ -0.71
CUX1-204ENST00000393824 CFAP20Q9Y6A4 193 aaKnown RBP10.62□□□□□ -0.71
CUX1-204ENST00000393824 BDP1A6H8Y1 2624 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 SH3D21A4FU49 640 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 FABP12A6NFH5 140 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 OR5K4A6NMS3 321 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 FZD6O60353 706 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 NIPSNAP2O75323 286 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 HLA-DQB1P01920 261 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 CTPS1P17812 591 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 WASP42768 502 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 SNTA1Q13424 505 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 LARS2Q15031 903 aaKnown RBP10.61□□□□□ -0.71
CUX1-204ENST00000393824 DOK6Q6PKX4 331 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 MTSS1LQ765P7 747 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 C9orf62Q8N4C0 152 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 LPCAT1Q8NF37 534 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 TRMT61AQ96FX7 289 aaKnown RBP10.61□□□□□ -0.71
CUX1-204ENST00000393824 OPALINQ96PE5 141 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 INPP5KQ9BT40 448 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 MIXL1Q9H2W2 232 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 SERHL2Q9H4I8 314 aa10.61□□□□□ -0.71
CUX1-204ENST00000393824 MS4A12Q9NXJ0 267 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms