RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RUNX3Q13761 415 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 DGCR6Q14129 220 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 ELOAQ14241 798 aaKnown RBP9.2□□□□□ -0.94
COL6A3-204ENST00000392003 SGCAQ16586 387 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 TRIM16LQ309B1 348 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 TMEM52BQ4KMG9 183 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 PERM1Q5SV97 790 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 FAM46CQ5VWP2 391 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 FAM71E1Q6IPT2 247 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 GPR153Q6NV75 609 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 FAHD1Q6P587 224 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF704Q6ZNC4 412 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-204ENST00000392003 IKBIPQ70UQ0 350 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 ADCK1Q86TW2 530 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 TAGAPQ8N103 731 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 OR5AK3PQ8NH89 298 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 FAR1Q8WVX9 515 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 TP53INP1Q96A56 240 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 CIDECQ96AQ7 238 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-204ENST00000392003 PAK1IP1Q9NWT1 392 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-204ENST00000392003 AASSQ9UDR5 926 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 RAB23Q9ULC3 237 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 BOLA1Q9Y3E2 137 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 PRKAB1Q9Y478 270 aa9.2□□□□□ -0.94
COL6A3-204ENST00000392003 STMND1H3BQB6 276 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 LILRB5O75023 590 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 APODP05090 189 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 IL3P08700 152 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 MAP2K4P45985 399 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 GP2P55259 537 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 DGUOKQ16854 277 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 COX20Q5RI15 118 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 AHSA2Q719I0 299 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 KRT77Q7Z794 578 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PDZD3Q86UT5 571 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 LRRTM4Q86VH4 590 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 RNF130Q86XS8 419 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 FBXL6Q8N531 539 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 GEMIN6Q8WXD5 167 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 RAB7BQ96AH8 199 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ZDHHC5Q9C0B5 715 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 HOXD1Q9GZZ0 328 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 CHST8Q9H2A9 424 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 IMPAD1Q9NX62 359 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 GULP1Q9UBP9 304 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ACSL6Q9UKU0 697 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PLAGL1Q9UM63 463 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 SH2B3Q9UQQ2 575 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 POFUT2Q9Y2G5 429 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 TP53BP1Q12888 1972 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 POLR1CO15160 346 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 KAT7O95251 611 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 CLEC2LP0C7M8 214 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PCMT1P22061 227 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ALDH9A1P49189 494 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 BMXP51813 675 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 MAPK12P53778 367 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 MESP2Q0VG99 397 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 SPDYE7PQ495Y7 208 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF852Q6ZMS4 543 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ETFBKMTQ8IXQ9 262 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 LGI4Q8N135 537 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF740Q8NDX6 193 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 OR5AR1Q8NGP9 310 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 OR52J3Q8NH60 311 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 TRUB1Q8WWH5 349 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 MYDGFQ969H8 173 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 KCNC2Q96PR1 638 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 FEVQ99581 238 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 SEC22CQ9BRL7 303 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PCBD2Q9H0N5 130 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 TMEM38AQ9H6F2 299 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 HMG20AQ9NP66 347 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 MRPL39Q9NYK5 338 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 SCO2O43819 266 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 TNFRSF21O75509 655 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PAPLNO95428 1278 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PCCBP05166 539 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 UQCRC2P22695 453 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ACADLP28330 430 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 OR1E2P47887 323 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 IDH2P48735 452 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 CNTN1Q12860 1018 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PDE7AQ13946 482 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF846Q147U1 533 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 RGS21Q2M5E4 152 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PRSS48Q7RTY5 328 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 SLCO6A1Q86UG4 719 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ARMC8Q8IUR7 673 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 UTP15Q8TED0 518 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF300Q96RE9 604 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PITX2Q99697 317 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 PBX4Q9BYU1 374 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 IFT22Q9H7X7 185 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 NDUFAF4Q9P032 175 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 EXO1Q9UQ84 846 aaKnown RBP9.19□□□□□ -0.94
COL6A3-204ENST00000392003 LYVE1Q9Y5Y7 322 aa9.19□□□□□ -0.94
COL6A3-204ENST00000392003 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms