RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CLDN20P56880 219 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 BTN3A2P78410 334 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 IRF9Q00978 393 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 TTLL9Q3SXZ7 439 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 ARHGAP11AQ6P4F7 1023 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 B3GNT9Q6UX72 402 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 DDX53Q86TM3 631 aaKnown RBP11.3□□□□□ -0.6
NPHP4-202ENST00000378161 KIAA1143Q96AT1 154 aaPredicted RBP11.3□□□□□ -0.6
NPHP4-202ENST00000378161 LINGO1Q96FE5 620 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 CPNE2Q96FN4 548 aaPredicted RBP11.3□□□□□ -0.6
NPHP4-202ENST00000378161 CAMK1GQ96NX5 476 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 SMAD5Q99717 465 aaKnown RBP11.3□□□□□ -0.6
NPHP4-202ENST00000378161 SAGE1Q9NXZ1 904 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 A0A1W2PP18 115 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 H3BN98 237 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 AHSA1O95433 338 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 POMCP01189 267 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 SLC2A1P11166 492 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 S100A11P31949 105 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 PPT1P50897 306 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 CCR6P51684 374 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 SLC35A2P78381 396 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 PTPRJQ12913 1337 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 RHEBQ15382 184 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 C9orf131Q5VYM1 1079 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 OR56A4Q8NGH8 313 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 OR10A6Q8NH74 314 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 RPL10LQ96L21 214 aaKnown RBP11.3□□□□□ -0.6
NPHP4-202ENST00000378161 TUBGCP6Q96RT7 1819 aa11.3□□□□□ -0.6
NPHP4-202ENST00000378161 PKD1L3Q7Z443 1732 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TCRBV16S1A1N1A0A5B0 115 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FAM234BA2RU67 622 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 IFRD1O00458 451 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 CRYBA1P05813 215 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 HOXC6P09630 235 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FPR1P21462 350 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 NRLP54845 237 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 ISL1P61371 349 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 MAD2L1BPQ15013 274 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 CTU2Q2VPK5 515 aaKnown RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FAM46CQ5VWP2 391 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OR2T5Q6IEZ7 315 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TGIF2LXQ8IUE1 241 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FAM217AQ8IXS0 508 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 HS3ST5Q8IZT8 346 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OR4M2Q8NGB6 313 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OR2T29Q8NH02 315 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 PHOSPHO1Q8TCT1 267 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FOXJ1Q92949 421 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 PIGMQ9H3S5 423 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 EVA1AQ9H8M9 152 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SLC13A4Q9UKG4 626 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TRPV2Q9Y5S1 764 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SPIN1Q9Y657 262 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 STYXL1Q9Y6J8 313 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 ZNF541Q9H0D2 1346 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 WASH3PC4AMC7 463 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 GPR37O15354 613 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 MSCO60682 206 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SLC6A2P23975 617 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 KEAP1Q14145 624 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 BATFQ16520 125 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 INTS6LQ5JSJ4 861 aaKnown RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 EIF5AL1Q6IS14 154 aaKnown RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OR5T1Q8NG75 326 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 C18orf25Q96B23 403 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FCRL3Q96P31 734 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 GPR20Q99678 358 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SEMA4CQ9C0C4 833 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 ASAH2Q9NR71 780 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 PCDHGA6Q9Y5G7 932 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 CCDC88AQ3V6T2 1871 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 EEF1E1O43324 174 aaKnown RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OR10H2O60403 315 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 RAMP2O60895 175 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 RGS9O75916 674 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 FABP3P05413 133 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 UGT2B7P16662 529 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 ITGB8P26012 769 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 HOXC5Q00444 222 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 LAPTM4AQ15012 233 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 DPYSL2Q16555 572 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 IDNKQ5T6J7 187 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 OVOS1Q6IE37 1185 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TBPL2Q6SJ96 375 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SLC29A4Q7RTT9 530 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 REC114Q7Z4M0 266 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SERPINA12Q8IW75 414 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 PLD6Q8N2A8 252 aaKnown RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 PTGR2Q8N8N7 351 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 STAG3L4Q8TBR4 150 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 ZNF419Q96HQ0 510 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-202ENST00000378161 SORCS2Q96PQ0 1159 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 MGME1Q9BQP7 344 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 DUSP16Q9BY84 665 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 DUSP21Q9H596 190 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 CDCP1Q9H5V8 836 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TMEM185BQ9H7F4 350 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 MIOSQ9NXC5 875 aa11.29□□□□□ -0.6
NPHP4-202ENST00000378161 TEX10Q9NXF1 929 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms