RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TLE3Q04726 772 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 EIF4HQ15056 248 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 PCBP2Q15366 365 aaKnown RBP eCLIP6.21□□□□□ -1.42
UPF2-201ENST00000356352 SGCAQ16586 387 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SPANXN4Q5MJ08 99 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 UGT2A3Q6UWM9 527 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SERINC5Q86VE9 423 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 CARM1Q86X55 608 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF280BQ86YH2 543 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF366Q8N895 744 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 POGLUT1Q8NBL1 392 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 COQ8AQ8NI60 647 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PROKR1Q8TCW9 393 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SGTBQ96EQ0 304 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 NECTIN4Q96NY8 510 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ATG5Q9H1Y0 275 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 TOR3AQ9H497 397 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 UNKLQ9H9P5 680 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 AMBNQ9NP70 447 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 CD93Q9NPY3 652 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 RXFP3Q9NSD7 469 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 UBQLN2Q9UHD9 624 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PLAGL1Q9UM63 463 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF175Q9Y473 711 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 HSPE1-MOB4S4R3N1 261 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 RAC2P15153 192 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 CD9P21926 228 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PROZP22891 400 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ADH6P28332 368 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 RBMS1P29558 406 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 CCND3P30281 292 aaPredicted RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 GABRA3P34903 492 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 RPS15P62841 145 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 MZT1Q08AG7 82 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 DNASE1L3Q13609 305 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GINS1Q14691 196 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 UGT3A2Q3SY77 523 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 TMEM69Q5SWH9 247 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 TMEM198Q66K66 360 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GTF2IRD2BQ6EKJ0 949 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 NAPRTQ6XQN6 538 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GTF2IRD2Q86UP8 949 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PDSS2Q86YH6 399 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 UBQLNLQ8IYU4 475 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GPR137CQ8N3F9 429 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 TCEANCQ8N8B7 351 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 MFSD8Q8NHS3 518 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 MAFIPQ8WZ33 124 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF516Q92618 1163 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 HSPBAP1Q96EW2 488 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PTCHD1Q96NR3 888 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 CNN2Q99439 309 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 NPY6RQ99463 290 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SYT17Q9BSW7 474 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PBDC1Q9BVG4 233 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 OSBPL7Q9BZF2 842 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 IRF2BPLQ9H1B7 796 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF701Q9NV72 531 aaPredicted RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 COPZ2Q9P299 210 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SLC2A6Q9UGQ3 507 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 TTC24A2A3L6 582 aaPredicted RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 VSTM2BA6NLU5 285 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ASGR2P07307 311 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 HNRNPA0Q13151 305 aaKnown RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 SPATC1Q76KD6 591 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PM20D2Q8IYS1 436 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GOLM1Q8NBJ4 401 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 ZNF675Q8TD23 568 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 CASTOR1Q8WTX7 329 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 C22orf15Q8WYQ4 148 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 GLYATL1Q969I3 302 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 BORCS7Q96B45 105 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 MINDY3Q9H8M7 445 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 SPHK2Q9NRA0 654 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 PAK1IP1Q9NWT1 392 aaPredicted RBP6.21□□□□□ -1.42
UPF2-201ENST00000356352 TAS2R8Q9NYW2 309 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 DNAJC27Q9NZQ0 273 aa6.21□□□□□ -1.42
UPF2-201ENST00000356352 LOC100509620A0A075B734 347 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 XPNPEP2O43895 674 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 RNGTTO60942 597 aaKnown RBP6.2□□□□□ -1.42
UPF2-201ENST00000356352 RORAP35398 523 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 NUDT6P53370 316 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 FXYD6P3P58550 94 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 RPP30P78346 268 aaKnown RBP6.2□□□□□ -1.42
UPF2-201ENST00000356352 ZNF33BQ06732 778 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 MFSD13AQ14CX5 517 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 TCTE1Q5JU00 501 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 HAGHLQ6PII5 290 aaPredicted RBP6.2□□□□□ -1.42
UPF2-201ENST00000356352 HORMAD2Q8N7B1 307 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 AUTS2Q8WXX7 1259 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 RAD9AQ99638 391 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 SYT4Q9H2B2 425 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 EXTL2Q9UBQ6 330 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 SALL4Q9UJQ4 1053 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 CLEC4EQ9ULY5 219 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 EFCAB7A8K855 629 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 CXorf49A8MYA2 514 aaPredicted RBP6.2□□□□□ -1.42
UPF2-201ENST00000356352 INMT-MINDY4F8WBC2 141 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 PDLIM1O00151 329 aa6.2□□□□□ -1.42
UPF2-201ENST00000356352 ZNF217O75362 1048 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms