RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 POLR3HQ9Y535 204 aaPredicted RBP14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 PGRMC2O15173 223 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 SEC22BO75396 215 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 SNUPNO95149 360 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 PDGFAP04085 211 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 TAS2R50P59544 299 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 TRA2BP62995 288 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 AP2B1P63010 937 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 GALNTL6Q49A17 601 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 SOWAHCQ53LP3 525 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 VWA5B1Q5TIE3 1220 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 ATG16L1Q676U5 607 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 TCTN3Q6NUS6 607 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 GALNT18Q6P9A2 607 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 RIPOR1Q6ZS17 1223 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 Q6ZSR9 355 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 CDC26Q8NHZ8 85 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 RAB3IL1Q8TBN0 382 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 M1APQ8TC57 530 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 BRIX1Q8TDN6 353 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 C11orf24Q96F05 449 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 FAIM2Q9BWQ8 316 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 SLC25A18Q9H1K4 315 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 ZNF552Q9H707 407 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 C1orf109Q9NX04 203 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 SIRT5Q9NXA8 310 aa14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-201ENST00000332797 FAM208BQ5VWN6 2430 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 C1orf226A1L170 272 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 EIF4E1BA6NMX2 242 aaKnown RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 KLHL41O60662 606 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 GPR75O95800 540 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 ALPPP05187 535 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 IL3P08700 152 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 TNNI3P19429 210 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 PRPH2P23942 346 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 ALDH9A1P49189 494 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 RPL14P50914 215 aaKnown RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 PPP2R2AP63151 447 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 RPL38P63173 70 aaKnown RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 IGLV3-21P80748 117 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 ELAVL1Q15717 326 aaKnown RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 PDCD2Q16342 344 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 AGAP7PQ5VUJ5 663 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 NOXRED1Q6NXP6 359 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 ASB18Q6ZVZ8 466 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 SIRT6Q8N6T7 355 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 DNAJB14Q8TBM8 379 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 C16orf78Q8WTQ4 265 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 AGAP4Q96P64 663 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 DGAT2Q96PD7 388 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 MANSC1Q9H8J5 431 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 C5AR2Q9P296 337 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 PTGFRNQ9P2B2 879 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 VTI1BQ9UEU0 232 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 DLGAP4Q9Y2H0 992 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 ZNF451Q9Y4E5 1061 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 PCDHA9Q9Y5H5 950 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 BOD1L1Q8NFC6 3051 aa14.86□□□□□ -0.03
CCDC28A-201ENST00000332797 NPIPB8E9PQR5 432 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 LSM1O15116 133 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PRB1P04280 392 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 ALOX15P16050 662 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PIK3R1P27986 724 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 STT3AP46977 705 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PLIN5Q00G26 463 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 ZNF763Q0D2J5 394 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 TERF2Q15554 542 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 XKR7Q5GH72 579 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 JMJD6Q6NYC1 403 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 SLC48A1Q6P1K1 146 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 TMEM132CQ8N3T6 1108 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 C7orf57Q8NEG2 295 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 NFAM1Q8NET5 270 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 OR14A16Q8NHC5 309 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 FAM76AQ8TAV0 307 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PPWD1Q96BP3 646 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 C19orf60Q96EN9 201 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 METTL2AQ96IZ6 378 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PPP1R36Q96LQ0 422 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 C3orf30Q96M34 536 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 SMAD5Q99717 465 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 KCNK13Q9HB14 408 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 MMP25Q9NPA2 562 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 PNPOQ9NVS9 261 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 THAP1Q9NVV9 213 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 GIMAP2Q9UG22 337 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 CLCA3PQ9Y6N3 262 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 ATRXP46100 2492 aa14.85□□□□□ -0.03
CCDC28A-201ENST00000332797 KALRNO60229 2985 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 TNRC6AQ8NDV7 1962 aaKnown RBP14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 ATP6AP2A0A1C7CYW4 349 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 A0A1W2PS29 197 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 A8MUI8 341 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 C17orf105B2RV13 164 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 OR10H2O60403 315 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 SNNO75324 88 aaPredicted RBP14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 ATP6AP2O75787 350 aa14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 JUNP05412 331 aaKnown RBP14.84□□□□□ -0.03
CCDC28A-201ENST00000332797 COX7A2P14406 83 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms