RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CHST8Q9H2A9 424 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TLR6Q9Y2C9 796 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TCRBV16S1A1N1A0A5B0 115 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 HNRNPCL2B2RXH8 293 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 INSIG1O15503 277 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 PRKYO43930 277 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 LALBAP00709 142 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ACSM4P0C7M7 580 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 GJA1P17302 382 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 POU3F2P20265 443 aaPredicted RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 GKP32189 559 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 LRRC74AQ0VAA2 488 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ATP13A5Q4VNC0 1218 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ZNF782Q6ZMW2 699 aaPredicted RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 RBM45Q8IUH3 476 aaKnown RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 SPATA2LQ8IUW3 424 aaPredicted RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 C11orf65Q8NCR3 313 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 OR6J1Q8NGC5 347 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 OR6M1Q8NGM8 313 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 NPLOC4Q8TAT6 608 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 SORCS2Q96PQ0 1159 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 PPA2Q9H2U2 334 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ASIC5Q9NY37 505 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 MBD1Q9UIS9 605 aaPredicted RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 STOML2Q9UJZ1 356 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 GPR52Q9Y2T5 361 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 PCDHB9Q9Y5E1 797 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 GREB1Q4ZG55 1949 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ARL5CA6NH57 179 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 FFAR1O14842 300 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 CTSHP09668 335 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 RRASP10301 218 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 RPIAP49247 311 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 DCDC1P59894 354 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 RIN1Q13671 783 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 VEZF1Q14119 521 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 RPS26P11Q5JNZ5 115 aaPredicted RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 C10orf120Q5SQS8 335 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 SPRYD7Q5W111 196 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 GPAT4Q86UL3 456 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 STPG2Q8N412 459 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 MS4A15Q8N5U1 240 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 CLDN22Q8N7P3 220 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 RAET1EQ8TD07 263 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 UCN3Q969E3 161 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 SLC29A3Q9BZD2 475 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 PDFQ9HBH1 243 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ABT1Q9ULW3 272 aaKnown RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 SH3D21A4FU49 640 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 CD8B2A6NJW9 211 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 HCN1O60741 890 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ETHE1O95571 254 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 CD8BP10966 210 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 BDKRB1P46663 353 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 EVX1P49640 407 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 LIM2P55344 173 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.84□□□□□ -0.35
SKA3-201ENST00000298260 C1DQ13901 141 aaKnown RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 CRB2Q5IJ48 1285 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 HSDL2Q6YN16 418 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 LHFPL3Q86UP9 236 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 LAPTM4BQ86VI4 370 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 TRIM69Q86WT6 500 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 DNAJB8Q8NHS0 232 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 HUS1BQ8NHY5 278 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 HSD17B8Q92506 261 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ZC3HAV1LQ96H79 300 aaKnown RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 GPR63Q9BZJ6 419 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 ABCG5Q9H222 651 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 FLRT1Q9NZU1 646 aa12.84□□□□□ -0.35
SKA3-201ENST00000298260 DIMT1Q9UNQ2 313 aaKnown RBP12.84□□□□□ -0.35
SKA3-201ENST00000298260 OR12D1P0DN82 309 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 HOXB6P17509 224 aaKnown RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 ELK1P19419 428 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 RPS26P62854 115 aaKnown RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 DSC1Q08554 894 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 PUDPQ08623 228 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 MLLT11Q13015 90 aaPredicted RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 MTAPQ13126 283 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 KCNC3Q14003 757 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 CLVS2Q5SYC1 327 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 SHEQ5VZ18 495 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 GDPGP1Q6ZNW5 385 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 TECPR1Q7Z6L1 1165 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 OR52I1Q8NGK6 324 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 OR4A15Q8NGL6 344 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 AP2M1Q96CW1 435 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 CXorf58Q96LI9 332 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 KCNJ15Q99712 375 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 ATF6BQ99941 703 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 RSPO3Q9BXY4 272 aaPredicted RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 PIGUQ9H490 435 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 SAV1Q9H4B6 383 aaPredicted RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 ASB8Q9H765 288 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 CTPS2Q9NRF8 586 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 A0A1W2PPL8 197 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 OR10H3O60404 316 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 SEMA7AO75326 666 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 TRIM3O75382 744 aaPredicted RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 RECKO95980 971 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms