RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 BTNL2Q9UIR0 455 aa17.82■□□□□ 0.44
PDLIM3-202ENST00000284770 PACSIN3Q9UKS6 424 aa17.82■□□□□ 0.44
PDLIM3-202ENST00000284770 MAP4K5Q9Y4K4 846 aa17.82■□□□□ 0.44
PDLIM3-202ENST00000284770 NEUROG3Q9Y4Z2 214 aa17.82■□□□□ 0.44
PDLIM3-202ENST00000284770 GVINP1Q7Z2Y8 2422 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 FAM227AF5H4B4 570 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 MGRN1O60291 552 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 KCNH1O95259 989 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 NTRK1P04629 796 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 FRKP42685 505 aaPredicted RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 PCBP4P57723 403 aaKnown RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 PLIN5Q00G26 463 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CAPRIN1Q14444 709 aaKnown RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 C6orf10Q5SRN2 563 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 DNAJB8Q8NHS0 232 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 WDR60Q8WVS4 1066 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 TANKQ92844 425 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 COL26A1Q96A83 441 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CLIP3Q96DZ5 547 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CCDC115Q96NT0 180 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 GBP5Q96PP8 586 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CCDC187A0A096LP49 1063 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 BLACEA4D250 179 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 PDPK1O15530 556 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 ERAL1O75616 437 aaKnown RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 ITIH1P19827 911 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 SLC7A2P52569 658 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 HNRNPFP52597 415 aaKnown RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 RAB15P59190 212 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CEACAM20Q6UY09 585 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 NET1Q7Z628 596 aaPredicted RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CLECL1Q8IZS7 167 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CACTIN-AS1Q8N1I8 211 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 TMEM52Q8NDY8 209 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 TBC1D20Q96BZ9 403 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 MIEF2Q96C03 454 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 CNRIP1Q96F85 164 aaPredicted RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 ADA2Q9NZK5 511 aa17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 MRPS33Q9Y291 106 aaKnown RBP17.81■□□□□ 0.44
PDLIM3-202ENST00000284770 FAM186AA6NE01 2351 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 A0A1W2PRB8 838 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 RFXANKO14593 260 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 CPNE3O75131 537 aaKnown RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ERN1O75460 977 aaKnown RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 EFNA1P20827 205 aaPredicted RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 FBLP22087 321 aaKnown RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 XCR1P46094 333 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 TRPC1P48995 793 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 NOVA1P51513 510 aaKnown RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ABHD18Q0P651 414 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 CEBPEQ15744 281 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 DCAF12Q5T6F0 453 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 MED25Q71SY5 747 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 SLC15A3Q8IY34 581 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ZBED6CLQ96FA7 236 aaPredicted RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 PANX1Q96RD7 426 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 INPP5KQ9BT40 448 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ACSS1Q9NUB1 689 aaPredicted RBP17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 CD300AQ9UGN4 299 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ERVK-11Q9UQG0 969 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 ZNF780BQ9Y6R6 833 aa17.8■□□□□ 0.44
PDLIM3-202ENST00000284770 A0A096LPI6 279 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 NME4O00746 187 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 PLD2O14939 933 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 JMJD7P0C870 316 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 HOXB9P17482 250 aaPredicted RBP17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 IL10P22301 178 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 RORAP35398 523 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ETV5P41161 510 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 MANFP55145 182 aaKnown RBP17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 KPNB1Q14974 876 aaKnown RBP17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 LRIF1Q5T3J3 769 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ARHGAP40Q5TG30 622 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 NANOGP8Q6NSW7 305 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ZNF595Q8IYB9 648 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 SAMD14Q8IZD0 417 aaPredicted RBP17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 RNF148Q8N7C7 305 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 OR4K14Q8NGD5 310 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 PMEPA1Q969W9 287 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 TMEM125Q96AQ2 219 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 RNF31Q96EP0 1072 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ZNF681Q96N22 645 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 OR1F2PQ96R84 312 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 CGREF1Q99674 301 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ZPBPQ9BS86 351 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 YIPF2Q9BWQ6 316 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 PAIP1Q9H074 479 aaKnown RBP17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 NANOGQ9H9S0 305 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 SLAMF7Q9NQ25 335 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 GIMAP4Q9NUV9 329 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 CMTM6Q9NX76 183 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 TRPC4Q9UBN4 977 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 PCDHGB4Q9UN71 923 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 ENTPD4Q9Y227 616 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 POMPQ9Y244 141 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 TRBV5-3A0A0A0MS03 114 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 PRORSD1PA6NEY8 169 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 MYO1GB0I1T2 1018 aa17.79■□□□□ 0.44
PDLIM3-202ENST00000284770 CLDN4O14493 209 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms