RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SLCO4A1Q96BD0 722 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 DPH2Q9BQC3 489 aaPredicted RBP13.32□□□□□ -0.28
SS18-201ENST00000269137 ARMC1Q9NVT9 282 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 C6orf203Q9P0P8 240 aaPredicted RBP13.32□□□□□ -0.28
SS18-201ENST00000269137 TMEM9Q9P0T7 183 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 PDP2Q9P2J9 529 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 ENTPD4Q9Y227 616 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 AP4S1Q9Y587 144 aa13.32□□□□□ -0.28
SS18-201ENST00000269137 WDR87Q6ZQQ6 2873 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 DMDP11532 3685 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 DHRS12A0PJE2 317 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 ZNF860A6NHJ4 632 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 CXCR6O00574 342 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 CYR61O00622 381 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 ERAL1O75616 437 aaKnown RBP13.31□□□□□ -0.28
SS18-201ENST00000269137 NTRK1P04629 796 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 RETP07949 1114 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 CKMT1AP12532 417 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 SOX11P35716 441 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 CHI3L1P36222 383 aaPredicted RBP13.31□□□□□ -0.28
SS18-201ENST00000269137 PTDSS1P48651 473 aaKnown RBP13.31□□□□□ -0.28
SS18-201ENST00000269137 ARL4DP49703 201 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 VEZF1Q14119 521 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 VMACQ2NL98 169 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 PROX2Q3B8N5 592 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 PERM1Q5SV97 790 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 SAXO2Q658L1 398 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 ADGRG5Q8IZF4 528 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 CA13Q8N1Q1 262 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 PQLC1Q8N2U9 271 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 SUN3Q8TAQ9 357 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 PNPT1Q8TCS8 783 aaKnown RBP13.31□□□□□ -0.28
SS18-201ENST00000269137 NEURL3Q96EH8 262 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 DPYSL5Q9BPU6 564 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 NUDT22Q9BRQ3 303 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 EFHD1Q9BUP0 239 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 GTPBP2Q9BX10 602 aaKnown RBP13.31□□□□□ -0.28
SS18-201ENST00000269137 ARRDC1-AS1Q9H2J1 176 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 C15orf41Q9Y2V0 281 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 ZNF780BQ9Y6R6 833 aa13.31□□□□□ -0.28
SS18-201ENST00000269137 ZNF318Q5VUA4 2279 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 RNF103-CHMP3A0A140T963 221 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 HYKKA2RU49 373 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 H3BMH7 237 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 SGK494L7N484 410 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 SEC16AO15027 2179 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 KHNYNO15037 678 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 FOXS1O43638 330 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 TNFRSF21O75509 655 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 NSA2O95478 260 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 CPNE6O95741 557 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 BMP2P12643 396 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 NELFEP18615 380 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 PSMA4P25789 261 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 MPIP34949 423 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 SOAT1P35610 550 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 CDK9P50750 372 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 NCBP2P52298 156 aaKnown RBP eCLIP13.3□□□□□ -0.281e-8■■■□□ 16.9
SS18-201ENST00000269137 SESN3P58005 492 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 OLR1P78380 273 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 HSPB3Q12988 150 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 SPIDRQ14159 915 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 GRM7Q14831 915 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 CLPPQ16740 277 aaPredicted RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 PLA2G2CQ5R387 149 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.3□□□□□ -0.28
SS18-201ENST00000269137 TMTC4Q5T4D3 741 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 ZC3H14Q6PJT7 736 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 TMEM64Q6YI46 380 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 OR9A4Q8NGU2 314 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 CANT1Q8WVQ1 401 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 FIG4Q92562 907 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 N4BP2L2Q92802 583 aaPredicted RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 CSF3RQ99062 836 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 ZNF768Q9H5H4 540 aaKnown RBP13.3□□□□□ -0.28
SS18-201ENST00000269137 ACSL6Q9UKU0 697 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 PCDHGB2Q9Y5G2 931 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 SNX8Q9Y5X2 465 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 WDFY4Q6ZS81 3184 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 FRYLO94915 3013 aa13.3□□□□□ -0.28
SS18-201ENST00000269137 CREG1O75629 220 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 ANKRD34CP0C6C1 535 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 MAGEA8P43361 318 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 CCT3P49368 545 aaKnown RBP13.29□□□□□ -0.28
SS18-201ENST00000269137 SEPHS1P49903 392 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 DUSP3P51452 185 aaPredicted RBP13.29□□□□□ -0.28
SS18-201ENST00000269137 RAB38P57729 211 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 COX20Q5RI15 118 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 LRRC74BQ6ZQY2 392 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 RNF130Q86XS8 419 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 TMEM126BQ8IUX1 230 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 CCDC116Q8IYX3 515 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 TTC29Q8NA56 475 aaPredicted RBP13.29□□□□□ -0.28
SS18-201ENST00000269137 PAPD5Q8NDF8 572 aaKnown RBP13.29□□□□□ -0.28
SS18-201ENST00000269137 OR4K14Q8NGD5 310 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 OR5T3Q8NGG3 340 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 OR5AK3PQ8NH89 298 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 SFXN5Q8TD22 340 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 NRG4Q8WWG1 115 aa13.29□□□□□ -0.28
SS18-201ENST00000269137 TANKQ92844 425 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms