RNA–Protein interactions for RNA: ENST00000640554.1

SDHD-209, Transcript of succinate dehydrogenase complex subunit D, human

TSL 5

Gene SDHD, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDHD-209	ENST00000640554	ZNF717	Q9BY31	904 aa	Predicted RBP	13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	DEFB126	Q9BYW3	111 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	PNO1	Q9NRX1	252 aa	Known RBP	13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	AGPAT4	Q9NRZ5	378 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	VPS29	Q9UBQ0	182 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	ZNF225	Q9UK10	706 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	ASB4	Q9Y574	426 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	PCDHGB6	Q9Y5F9	930 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	CLDN16	Q9Y5I7	305 aa		13.34	□□□□□ -0.27
SDHD-209	ENST00000640554	OR5H15	A6NDH6	313 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	MANBA	O00462	879 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	PPP6C	O00743	305 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	TRIM13	O60858	407 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	VPS4B	O75351	444 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	MYO1D	O94832	1006 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	ETHE1	O95571	254 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	WDPCP	O95876	746 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	PDYN	P01213	254 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	CELA2A	P08217	269 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	HNRNPF	P52597	415 aa	Known RBP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	NAGLU	P54802	743 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	MLLT10	P55197	1068 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	TRA2B	P62995	288 aa	Known RBP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	IGLV3-21	P80748	117 aa	Predicted RBP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	TNFRSF17	Q02223	184 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	LIPM	Q5VYY2	423 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	RPS27L	Q71UM5	84 aa	Known RBP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	CUZD1	Q86UP6	607 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	C4orf33	Q8N1A6	199 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	RNF175	Q8N4F7	328 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	CDYL2	Q8N8U2	506 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	TMEM52	Q8NDY8	209 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	ART5	Q96L15	291 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	CSF3R	Q99062	836 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	GSTO2	Q9H4Y5	243 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	VPS4A	Q9UN37	437 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	SLC12A4	Q9UP95	1085 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	PLAA	Q9Y263	795 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	ATG4B	Q9Y4P1	393 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	PCDHGA10	Q9Y5H3	936 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	COPG1	Q9Y678	874 aa	Known RBP	13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	SCN3A	Q9NY46	2000 aa		13.33	□□□□□ -0.28
SDHD-209	ENST00000640554	FCHO1	O14526	889 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	ERLIN1	O75477	346 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	EED	O75530	441 aa	Known RBP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	ZFAND5	O76080	213 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	GPR75	O95800	540 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	TSPAN8	P19075	237 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	TNNI3	P19429	210 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	GALNS	P34059	522 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	STT3A	P46977	705 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	GPR143	P51810	404 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	PLIN5	Q00G26	463 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	SGO1	Q5FBB7	561 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	CCNYL2	Q5T2Q4	361 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	FRMD7	Q6ZUT3	714 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	CRLF3	Q8IUI8	442 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	SRRM1	Q8IYB3	904 aa	Known RBP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	APCDD1L	Q8NCL9	501 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	OR1N1	Q8NGS0	311 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	OR8K3	Q8NH51	312 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	ANKRD9	Q96BM1	317 aa	Predicted RBP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	CNDP1	Q96KN2	507 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	UTP23	Q9BRU9	249 aa	Known RBP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	SORBS1	Q9BX66	1292 aa	Known RBP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	MID1IP1	Q9NPA3	183 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
SDHD-209	ENST00000640554	PSME2	Q9UL46	239 aa		13.32	□□□□□ -0.28
SDHD-209	ENST00000640554		A0A1B0GTL3	188 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554		A0A1W2PR48	441 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554		A8MUA0	341 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	FOXO6	A8MYZ6	492 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	RGS16	O15492	202 aa	Predicted RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	TMPRSS11D	O60235	418 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	PRAMEF2	O60811	474 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	KLK1	P06870	262 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	NR2F6	P10588	404 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	GSTM5	P46439	218 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	MAPK12	P53778	367 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	HNRNPH2	P55795	449 aa	Known RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	MLF1	P58340	268 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	KRT71	Q3SY84	523 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	SPIN4	Q56A73	249 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	OR52E8	Q6IFG1	317 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	CLNK	Q7Z7G1	428 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	ST13P4	Q8IZP2	240 aa	Predicted RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	OR5L2	Q8NGL0	311 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	AGAP11	Q8TF27	550 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	PTPMT1	Q8WUK0	201 aa	Predicted RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	CHTF18	Q8WVB6	975 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	SNRNP40	Q96DI7	357 aa	Known RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	METTL2A	Q96IZ6	378 aa	Known RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	DGAT2	Q96PD7	388 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	BARD1	Q99728	777 aa	Known RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	MRPL1	Q9BYD6	325 aa	Known RBP	13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	TRIM4	Q9C037	500 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	CDCP1	Q9H5V8	836 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	CLMP	Q9H6B4	373 aa		13.31	□□□□□ -0.28
SDHD-209	ENST00000640554	PLA2G3	Q9NZ20	509 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms