RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 UTP23Q9BRU9 249 aaKnown RBP17.97■□□□□ 0.47
CLN3-260ENST00000637578 CDCP1Q9H5V8 836 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 TRIM45Q9H8W5 580 aaPredicted RBP17.97■□□□□ 0.47
CLN3-260ENST00000637578 OLAHQ9NV23 265 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 PPT2Q9UMR5 302 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 RNF11Q9Y3C5 154 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 BLACEA4D250 179 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 GABRR3A8MPY1 467 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 A8MUA0 341 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 MYO1DO94832 1006 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 MYL2P10916 166 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 PPP2R1BP30154 601 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 TDGF1P3P51864 188 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 MLF1P58340 268 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 ZNF766Q5HY98 468 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 RNF175Q8N4F7 328 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 DNAJB8Q8NHS0 232 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 RDH11Q8TC12 318 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 RGMAQ96B86 450 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 ARL8AQ96BM9 186 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 REPS1Q96D71 796 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 SCMH1Q96GD3 660 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 MTERF1Q99551 399 aaKnown RBP17.96■□□□□ 0.47
CLN3-260ENST00000637578 NTMT1Q9BV86 223 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 ZNF717Q9BY31 904 aaPredicted RBP17.96■□□□□ 0.47
CLN3-260ENST00000637578 NOL11Q9H8H0 719 aaKnown RBP17.96■□□□□ 0.47
CLN3-260ENST00000637578 ZBTB26Q9HCK0 441 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 SSU72Q9NP77 194 aaKnown RBP17.96■□□□□ 0.47
CLN3-260ENST00000637578 ADAP2Q9NPF8 381 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 VTI1BQ9UEU0 232 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 PCTPQ9UKL6 214 aa17.96■□□□□ 0.47
CLN3-260ENST00000637578 FOXE1O00358 373 aaPredicted RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 PLPP1O14494 284 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 SH3BGRLO75368 114 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 RASAL1O95294 804 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 RPS17P08708 135 aaKnown RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 PTX3P26022 381 aaPredicted RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 MAGOHP61326 146 aaKnown RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 CUL3Q13618 768 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 ELOAQ14241 798 aaKnown RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 OR1C1Q15619 314 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 ZCCHC7Q8N3Z6 543 aaKnown RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 SSC4DQ8WTU2 575 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 NR4A3Q92570 626 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 TMEM237Q96Q45 408 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 C1QTNF3Q9BXJ4 246 aa17.96■□□□□ 0.46
CLN3-260ENST00000637578 PNO1Q9NRX1 252 aaKnown RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 ZNF223Q9UK11 482 aaPredicted RBP17.96■□□□□ 0.46
CLN3-260ENST00000637578 SAP18O00422 153 aaKnown RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 NEURL1O76050 574 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 CLDN9O95484 217 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 CPA3P15088 417 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 TPP2P29144 1249 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 TRHRP34981 398 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 SSR2P43308 183 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 CLCN2P51788 898 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 PRKAA2P54646 552 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 HERVK_113P63132 956 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 DDX39BQ13838 428 aaKnown RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 ELAVL1Q15717 326 aaKnown RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 CPSF6Q16630 551 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-260ENST00000637578 AGBL2Q5U5Z8 902 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ZNF468Q5VIY5 522 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 SPINK14Q6IE38 97 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 RPS27LQ71UM5 84 aaKnown RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 CLNKQ7Z7G1 428 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 MYLK4Q86YV6 388 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 SLC22A9Q8IVM8 553 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 OR52B6Q8NGF0 335 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ANKRD9Q96BM1 317 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 NSUN5Q96P11 429 aaKnown RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 SH3GL2Q99962 352 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ERVK-6Q9BXR3 956 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ALOXE3Q9BYJ1 711 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ANKRD10Q9NXR5 420 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 ERRFI1Q9UJM3 462 aaPredicted RBP17.95■□□□□ 0.46
CLN3-260ENST00000637578 MID2Q9UJV3 735 aa17.95■□□□□ 0.46
CLN3-260ENST00000637578 DDAH2O95865 285 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 CRYABP02511 175 aaKnown RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 RNF224P0DH78 156 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 RPS13P62277 151 aaKnown RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 IGLV3-21P80748 117 aaPredicted RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 TRAF3Q13114 568 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 SLAMF1Q13291 335 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 MPP2Q14168 576 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 PCLAFQ15004 111 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 ZRSR2Q15696 482 aaKnown RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 ZNF678Q5SXM1 525 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 ZNF227Q86WZ6 799 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 TMEM132CQ8N3T6 1108 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 PTPMT1Q8WUK0 201 aaPredicted RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 VMP1Q96GC9 406 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 CENPKQ9BS16 269 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 SORBS1Q9BX66 1292 aaKnown RBP17.94■□□□□ 0.46
CLN3-260ENST00000637578 DEFB126Q9BYW3 111 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 MS4A12Q9NXJ0 267 aa17.94■□□□□ 0.46
CLN3-260ENST00000637578 ETHE1O95571 254 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 BSGP35613 385 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 ST13P50502 369 aaKnown RBP17.93■□□□□ 0.46
CLN3-260ENST00000637578 NEK2P51955 445 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms