RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FRKP42685 505 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-203ENST00000631321 RPA4Q13156 261 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 ILKQ13418 452 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 SOWAHCQ53LP3 525 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-203ENST00000631321 PDZD3Q86UT5 571 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 TAGAPQ8N103 731 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 PARP16Q8N5Y8 322 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 TM4SF18Q96CE8 201 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 IL17FQ96PD4 163 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 OR5M11Q96RB7 305 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 MGLLQ99685 303 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 CHCHD6Q9BRQ6 235 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 RNF167Q9H6Y7 350 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 NEUROD4Q9HD90 331 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 TRBV4-1A0A0J9YWV2 114 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 KDM1AO60341 852 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 OXSR1O95747 527 aaPredicted RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 PTTG1O95997 202 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 ADH5P11766 374 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 OSMP13725 252 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 S100A5P33763 92 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 BSGP35613 385 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 PCBP4P57723 403 aaKnown RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 HTRA4P83105 476 aaPredicted RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 C9orf64Q5T6V5 341 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 KHDRBS2Q5VWX1 349 aaKnown RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 C12orf40Q86WS4 652 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 DCUN1D3Q8IWE4 304 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 NLGN4XQ8N0W4 816 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 ZNF513Q8N8E2 541 aaPredicted RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 RSPO3Q9BXY4 272 aaPredicted RBP12.15□□□□□ -0.47
LINC00540-203ENST00000631321 MS4A8Q9BY19 250 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 UCK2Q9BZX2 261 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 TAS2R16Q9NYV7 291 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 ZNF229Q9UJW7 825 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 MGAT4BQ9UQ53 548 aa12.15□□□□□ -0.47
LINC00540-203ENST00000631321 CCRL2O00421 344 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 TBX1O43435 398 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 TIMP1P01033 207 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 DDX5P17844 614 aaKnown RBP12.14□□□□□ -0.47
LINC00540-203ENST00000631321 NTHL1P78549 312 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 RHAGQ02094 409 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.14□□□□□ -0.47
LINC00540-203ENST00000631321 SLC13A2Q13183 592 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 ARHGAP19Q14CB8 494 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 TMEM52BQ4KMG9 183 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 RPS26P11Q5JNZ5 115 aaPredicted RBP12.14□□□□□ -0.47
LINC00540-203ENST00000631321 SLX4IPQ5VYV7 408 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 TMEM19Q96HH6 336 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 Q96MT0 163 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 LRRC3BQ96PB8 259 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 FUZQ9BT04 418 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 CRISPLD2Q9H0B8 497 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 WASH6PQ9NQA3 447 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 QPCTLQ9NXS2 382 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 RHCGQ9UBD6 479 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 ACAD8Q9UKU7 415 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 MKLN1Q9UL63 735 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 CFL2Q9Y281 166 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 ASF1AQ9Y294 204 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 LSM2Q9Y333 95 aaKnown RBP12.14□□□□□ -0.47
LINC00540-203ENST00000631321 SNX8Q9Y5X2 465 aa12.14□□□□□ -0.47
LINC00540-203ENST00000631321 C5orf58C9J3I9 102 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 FAAHO00519 579 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ARHGAP33O14559 1287 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 HAT1O14929 419 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 PDPK1O15530 556 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 MMP20O60882 483 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 SEMA7AO75326 666 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 PDE9AO76083 593 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 BCHEP06276 602 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ADRB3P13945 408 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ENDOUP21128 410 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TMED10P49755 219 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 MAPK12P53778 367 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 CYP4F2P78329 520 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 SSX1Q16384 188 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TSTQ16762 297 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 HNRNPA1L2Q32P51 320 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 MEDAGQ5VYS4 303 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 RNLSQ5VYX0 342 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 PLPP4Q5VZY2 271 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 C12orf73Q69YU5 71 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TCTN3Q6NUS6 607 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 CCDC190Q86UF4 302 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 C17orf64Q86WR6 236 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 CYP4Z2PQ8N1L4 340 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 OR5AR1Q8NGP9 310 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 HPS1Q92902 700 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 NXPE3Q969Y0 559 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TXNDC15Q96J42 360 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TRNT1Q96Q11 434 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 RACGAP1Q9H0H5 632 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 NT5DC2Q9H857 520 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 SIRT3Q9NTG7 399 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TMCC3Q9ULS5 477 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 A0A075B6Q4 140 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TLR4O00206 839 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 CAPN5O15484 640 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 KIAA0513O60268 411 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms