RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CLDN4O14493 209 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 PCDH17O14917 1159 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SERPINE1P05121 402 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SERPINA7P05543 415 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 LINC00032P0C843 101 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 CD97P48960 835 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 GPR143P51810 404 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SLC18A1P54219 525 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SLC26A5P58743 744 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF33BQ06732 778 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ACTN3Q08043 901 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SLC13A2Q13183 592 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 MYBPC3Q14896 1274 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 KIAA0040Q15053 153 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF750Q32MQ0 723 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 CCNYL2Q5T2Q4 361 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 B3GNTL1Q67FW5 361 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 TCTN3Q6NUS6 607 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 CYP20A1Q6UW02 462 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 PTRH1Q86Y79 214 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 CLYBLQ8N0X4 340 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 KIF2BQ8N4N8 673 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 C9orf43Q8TAL5 461 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ADAMTS18Q8TE60 1221 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ATP6V1G3Q96LB4 118 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 C3orf30Q96M34 536 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SORT1Q99523 831 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SMAD5Q99717 465 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 NPAS2Q99743 824 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 PAIP2Q9BPZ3 127 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 TUBB6Q9BUF5 446 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 ALOXE3Q9BYJ1 711 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 STMN4Q9H169 189 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 SLC25A18Q9H1K4 315 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 PNO1Q9NRX1 252 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 RIC8BQ9NVN3 520 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 LYARQ9NX58 379 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 GPR83Q9NYM4 423 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 AHSPQ9NZD4 102 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 GIMAP2Q9UG22 337 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 CES1P1Q9UKY3 287 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 GOLGA6L10A6NI86 522 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 MAN1A2O60476 641 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 CRCPO75575 148 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 JUNP05412 331 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 ST13P50502 369 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 ABCE1P61221 599 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 IGLV3-21P80748 117 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 FOLH1Q04609 750 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PRSS53Q2L4Q9 553 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 BTBD16Q32M84 506 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 SH2D4BQ5SQS7 431 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 HHATQ5VTY9 493 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PLAG1Q6DJT9 500 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 KBTBD2Q8IY47 623 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 SIRT6Q8N6T7 355 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF321PQ8N8H1 164 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 DNAJB14Q8TBM8 379 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 BRIX1Q8TDN6 353 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PTPMT1Q8WUK0 201 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PPWD1Q96BP3 646 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 EBPLQ9BY08 206 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 LHPPQ9H008 270 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 SIRT5Q9NXA8 310 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 C5AR2Q9P296 337 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 HEY2Q9UBP5 337 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 C19orf25Q9UFG5 118 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PHF11Q9UIL8 331 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF223Q9UK11 482 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 PIEZO2Q9H5I5 2752 aa13.29□□□□□ -0.28
SHKBP1-217ENST00000598558 SMG1Q96Q15 3661 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 PIP5K1BO14986 540 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 SOX11P35716 441 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 SERPINB5P36952 375 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 MAPK12P53778 367 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 DUSP2Q05923 314 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 BST1Q10588 318 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 NFATC3Q12968 1075 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 LACTB2Q53H82 288 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 SPDYAQ5MJ70 313 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 NDUFAF5Q5TEU4 345 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 FCRLBQ6BAA4 426 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 GALNT18Q6P9A2 607 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 RNF165Q6ZSG1 346 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 ASB18Q6ZVZ8 466 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 PAGE2Q7Z2X7 111 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF843Q8N446 348 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF781Q8N8C0 355 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 M1APQ8TC57 530 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 ELP5Q8TE02 316 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 C16orf78Q8WTQ4 265 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 TWIST2Q8WVJ9 160 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 TANKQ92844 425 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 LPAR4Q99677 370 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 EML4Q9HC35 981 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 NMRK1Q9NWW6 199 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 MS4A12Q9NXJ0 267 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 PTGFRNQ9P2B2 879 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 VTI1BQ9UEU0 232 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms