RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KIAA1328Q86T90 577 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 DND1Q8IYX4 353 aaKnown RBP9.32□□□□□ -0.92
TRIM28-210ENST00000597618 TMEM52Q8NDY8 209 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 SLC22A8Q8TCC7 542 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 SLC2A12Q8TD20 617 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 CALML6Q8TD86 181 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 PAQR8Q8TEZ7 354 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 KIAA1191Q96A73 305 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 FBXL8Q96CD0 374 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 LINGO1Q96FE5 620 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 TRIM54Q9BYV2 358 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 AICDAQ9GZX7 198 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 SH2D2AQ9NP31 389 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 TAS2R13Q9NYV9 303 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 JKAMPQ9P055 326 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 COPS7AQ9UBW8 275 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 VTI1BQ9UEU0 232 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 EIF3LQ9Y262 564 aaKnown RBP9.32□□□□□ -0.92
TRIM28-210ENST00000597618 ZCWPW2A0A1B0GU75 182 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TCRBV7S3A2A0A539 114 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 MAGEB16A2A368 324 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 SH3D21A4FU49 640 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 MBD3L4A6NDZ8 208 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 MBD3L3A6NE82 208 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TRIM64A6NGJ6 449 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TRIM64BA6NI03 449 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 MBD3L5A6NJ08 208 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CD8B2A6NJW9 211 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 KDM4EB2RXH2 506 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CASKO14936 926 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ERI3O43414 337 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CTNSO60931 367 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ERN1O75460 977 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CRLF1O75462 422 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 C8BP07358 591 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TNNI3P19429 210 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 HPDP32754 393 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TRPC1P48995 793 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CRYZQ08257 329 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 STX4Q12846 297 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 DUSP8Q13202 625 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 EFTUD2Q15029 972 aaKnown RBP eCLIP9.31□□□□□ -0.923e-16■■■■■ 50.3
TRIM28-210ENST00000597618 CCNG2Q16589 344 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF791Q3KP31 576 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 PIGGQ5H8A4 983 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 PRAMEF20Q5VT98 475 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 DRICH1Q6PGQ1 229 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 NXPE4Q6UWF7 544 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TMPRSS11BQ86T26 416 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 RASGEF1CQ8N431 466 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF321PQ8N8H1 164 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TTLQ8NG68 377 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 MBD3L2Q8NHZ7 208 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 NUBPLQ8TB37 319 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 NTNG2Q96CW9 530 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 SPACA9Q96E40 222 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 JSRP1Q96MG2 331 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 SECISBP2Q96T21 854 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 NDNQ99608 321 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 TIMP4Q99727 224 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 WDR83Q9BRX9 315 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 FAM167BQ9BTA0 163 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 RBM24Q9BX46 236 aaKnown RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ALOXE3Q9BYJ1 711 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 PRDM14Q9GZV8 571 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 EPB41L4BQ9H329 900 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 C20orf96Q9NUD7 363 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-210ENST00000597618 CNIH4Q9P003 139 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 FBXO5Q9UKT4 447 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 ARHGAP21Q5T5U3 1957 aa9.31□□□□□ -0.92
TRIM28-210ENST00000597618 A0A0G2JN53 185 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 RNF212BA8MTL3 300 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CYR61O00622 381 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 HAUS5O94927 633 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 ENO2P09104 434 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 COX7A2P14406 83 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 FPR1P21462 350 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 GDF1P27539 372 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 GSTM2P28161 218 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 HNRNPH1P31943 449 aaKnown RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CPA2P48052 419 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 AGFG1P52594 562 aaKnown RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 LIM2P55344 173 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 TIAL1Q01085 375 aaKnown RBP eCLIP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 ASPHQ12797 758 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 KIF5AQ12840 1032 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 CBLBQ13191 982 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 SERTAD2Q14140 314 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 PAQR3Q6TCH7 311 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 THOC6Q86W42 341 aaKnown RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 KLHDC8AQ8IYD2 350 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 TXLNBQ8N3L3 684 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 SLC15A4Q8N697 577 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 FAM13CQ8NE31 585 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 C7orf57Q8NEG2 295 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 GABPB2Q8TAK5 448 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-210ENST00000597618 MS4A6EQ96DS6 147 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 PERPQ96FX8 193 aa9.3□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF597Q96LX8 424 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms