RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LDB3O75112 727 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 SEMA3DO95025 777 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 OTCP00480 354 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 TAC1P20366 129 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 TPP2P29144 1249 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 BSGP35613 385 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 CLCN2P51788 898 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 GPR143P51810 404 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 NEK2P51955 445 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 MLF1P58340 268 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 STX4Q12846 297 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 SLAMF1Q13291 335 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 ELOAQ14241 798 aaKnown RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 OR1C1Q15619 314 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 EIF2S3LQ2VIR3 472 aaKnown RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 ZNF766Q5HY98 468 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 ZNF324BQ6AW86 544 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 RPS27LQ71UM5 84 aaKnown RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 NUDT13Q86X67 352 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 OR4F6Q8NGB9 312 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 OR14A16Q8NHC5 309 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 UBLCP1Q8WVY7 318 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 NCLNQ969V3 563 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 SIGLEC12Q96PQ1 595 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 CCDC77Q9BR77 488 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 DEFB126Q9BYW3 111 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 CDCP1Q9H5V8 836 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 ANKZF1Q9H8Y5 726 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 LYARQ9NX58 379 aaKnown RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 MS4A12Q9NXJ0 267 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 PSD3Q9NYI0 1048 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 PHF11Q9UIL8 331 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 ZNF223Q9UK11 482 aaPredicted RBP14.09□□□□□ -0.15
TRIM28-205ENST00000595028 PCDHGB6Q9Y5F9 930 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 F8P00451 2351 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 NF1P21359 2839 aa14.09□□□□□ -0.15
TRIM28-205ENST00000595028 A0A1B0GTL3 188 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 FGF17O60258 216 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 EEDO75530 441 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 CLDN1O95832 211 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 SHBGP04278 402 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 IFNA16P05015 189 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 GSTA1P08263 222 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 PYGBP11216 843 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 CD96P40200 585 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 ST13P50502 369 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 TDGF1P3P51864 188 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 CDH13P55290 713 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 HNRNPH2P55795 449 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 HERVK_113P63132 956 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 IGLV3-21P80748 117 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 ID2Q02363 134 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 OC90Q02509 493 aaPredicted RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 IFT88Q13099 833 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 SERTAD2Q14140 314 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 LETMD1Q6P1Q0 360 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 MILR1Q7Z6M3 343 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 GPR180Q86V85 440 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 TMEM132CQ8N3T6 1108 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 PRR7Q8TB68 274 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 NR4A3Q92570 626 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 DAZLQ92904 295 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 SCMH1Q96GD3 660 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 C5orf34Q96MH7 638 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 TMEM237Q96Q45 408 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 SERPINI1Q99574 410 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 ERVK-6Q9BXR3 956 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 ALOXE3Q9BYJ1 711 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 DDX31Q9H8H2 851 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 PPCSQ9HAB8 311 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 VTI1BQ9UEU0 232 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 ATG4BQ9Y4P1 393 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 CLCA3PQ9Y6N3 262 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 DIDO1Q9BTC0 2240 aaKnown RBP14.08□□□□□ -0.16
TRIM28-205ENST00000595028 PDZD2O15018 2839 aa14.08□□□□□ -0.16
TRIM28-205ENST00000595028 MYOCOSA0A1B0GUC4 107 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 PPP6CO00743 305 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 FCHO1O14526 889 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TMPRSS11DO60235 418 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 DLX3O60479 287 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 NEURL1O76050 574 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 RASAL1O95294 804 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 DDAH2O95865 285 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 CD46P15529 392 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TSPAN8P19075 237 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 ATP5F1P24539 256 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TRHRP34981 398 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 BUD31P41223 144 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 SLCO1A2P46721 670 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 PMP22Q01453 160 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 ZNF468Q5VIY5 522 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TTC19Q6DKK2 380 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 SPINK14Q6IE38 97 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 MRM1Q6IN84 353 aaKnown RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TDRPQ86YL5 185 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 TMEM178AQ8NBL3 297 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 MORN4Q8NDC4 146 aa14.07□□□□□ -0.16
TRIM28-205ENST00000595028 PTPMT1Q8WUK0 201 aaPredicted RBP14.07□□□□□ -0.16
TRIM28-205ENST00000595028 ANKRD9Q96BM1 317 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms