RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PPP6CO00743 305 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 FCHO1O14526 889 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 DLX3O60479 287 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 CD46P15529 392 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 TNNI3P19429 210 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 ATP5F1P24539 256 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-206ENST00000579558 TLX1P31314 330 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-206ENST00000579558 SLCO1A2P46721 670 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 GPR143P51810 404 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 SGO1Q5FBB7 561 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 C18orf63Q68DL7 685 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 SPINK14Q6IE38 97 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 LETMD1Q6P1Q0 360 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 CYP20A1Q6UW02 462 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 NUDT13Q86X67 352 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 OR14A16Q8NHC5 309 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 TRPC4APQ8TEL6 797 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 C5orf34Q96MH7 638 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 SLX1AQ9BQ83 275 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 ELOVL6Q9H5J4 265 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 RPF2Q9H7B2 306 aaKnown RBP22.28■■□□□ 1.16
SHMT1-206ENST00000579558 DDX31Q9H8H2 851 aaKnown RBP22.28■■□□□ 1.16
SHMT1-206ENST00000579558 PPCSQ9HAB8 311 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 KLHL1Q9NR64 748 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 LRFN1Q9P244 771 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 PCDHGB6Q9Y5F9 930 aa22.28■■□□□ 1.16
SHMT1-206ENST00000579558 A0A1W2PPM1 405 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 SMIM23A6NLE4 172 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 CDK2AP1O14519 115 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 TMPRSS11DO60235 418 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 FGF17O60258 216 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 SEMA7AO75326 666 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 SUPT7LO94864 414 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 SEMA3DO95025 777 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 CRYABP02511 175 aaKnown RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 HSD17B3P37058 310 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 BUD31P41223 144 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 CLCQ05315 142 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 UNC50Q53HI1 259 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF678Q5SXM1 525 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF468Q5VIY5 522 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 ZNF324BQ6AW86 544 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 MRM1Q6IN84 353 aaKnown RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 OR4N5Q8IXE1 308 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 ARMC10Q8N2F6 343 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 MORN4Q8NDC4 146 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 C7orf57Q8NEG2 295 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 PTPMT1Q8WUK0 201 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-206ENST00000579558 NR4A3Q92570 626 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 TMEM237Q96Q45 408 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 HES7Q9BYE0 225 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 DCDC2Q9UHG0 476 aa22.27■■□□□ 1.16
SHMT1-206ENST00000579558 FOXO6A8MYZ6 492 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 C17orf105B2RV13 164 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 PRKRAO75569 313 aaKnown RBP22.26■■□□□ 1.15
SHMT1-206ENST00000579558 NEURL1O76050 574 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 ZFAND5O76080 213 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 FAM58BPP0C7Q3 252 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 KRT15P19012 456 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 CYB561P49447 251 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 PMP22Q01453 160 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 TDRPQ86YL5 185 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 SLC22A9Q8IVM8 553 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 TMEM178AQ8NBL3 297 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 MYRIPQ8NFW9 859 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 DNAJB8Q8NHS0 232 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 TANKQ92844 425 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 SCMH1Q96GD3 660 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 OR8D2Q9GZM6 311 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 TRPS1Q9UHF7 1281 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 SNX6Q9UNH7 406 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 ASB4Q9Y574 426 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 NAV2Q8IVL1 2488 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 LRRK2Q5S007 2527 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 SVILO95425 2214 aa22.26■■□□□ 1.15
SHMT1-206ENST00000579558 PROM1O43490 865 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 GLRA3O75311 464 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 OR4F21O95013 312 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 GBAP04062 536 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 COX7A2P14406 83 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 IMPDH1P20839 514 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 TRHRP34981 398 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-206ENST00000579558 PRKAA2P54646 552 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 IGLV3-21P80748 117 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-206ENST00000579558 FOLH1Q04609 750 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 SLC25A25Q6KCM7 469 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 EPS8L3Q8TE67 593 aaKnown RBP22.25■■□□□ 1.15
SHMT1-206ENST00000579558 SELENOMQ8WWX9 145 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 DGAT2Q96PD7 388 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 WDR41Q9HAD4 459 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 FARSBQ9NSD9 589 aaKnown RBP22.25■■□□□ 1.15
SHMT1-206ENST00000579558 AHSPQ9NZD4 102 aa22.25■■□□□ 1.15
SHMT1-206ENST00000579558 A0A1W2PR48 441 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 PRKNO60260 465 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-206ENST00000579558 ITGA10O75578 1167 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SLC25A12O75746 678 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 PDYNP01213 254 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 SP1P08047 785 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 NR2F6P10588 404 aa22.24■■□□□ 1.15
SHMT1-206ENST00000579558 STT3AP46977 705 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms