RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MINDY2Q8NBR6 621 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 IL17DQ8TAD2 202 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 AGR3Q8TD06 166 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 DQX1Q8TE96 717 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 SLC35F5Q8WV83 523 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 OIT3Q8WWZ8 545 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 GGHQ92820 318 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 AZIN2Q96A70 460 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 RFT1Q96AA3 541 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 THOC1Q96FV9 657 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 SECISBP2Q96T21 854 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 PCYT2Q99447 389 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 COQ7Q99807 217 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 TRMOQ9BU70 441 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 TRMT61BQ9BVS5 477 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 POLDIP3Q9BY77 421 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 YY1AP1Q9H869 796 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 PANK3Q9H999 370 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 CLK4Q9HAZ1 481 aaKnown RBP5.37□□□□□ -1.55
VPS53-219ENST00000576019 AIPL1Q9NZN9 384 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 COPS7AQ9UBW8 275 aa5.37□□□□□ -1.55
VPS53-219ENST00000576019 WDR81Q562E7 1941 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 RTTNQ86VV8 2226 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ARPC4-TTLL3A0A0A6YYG9 625 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 C15orf38-AP3S2A0A0A6YYH1 394 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 KIR2DS5A0A0G2JLQ3 304 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 MAGEB16A2A368 324 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 F8VVB4 439 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 F8VWA3 439 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 KIR2DS3K7RE56 304 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 TIMM23O14925 209 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 MAPK13O15264 365 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 GRID2O43424 1007 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 VPS26AO75436 327 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 STBD1O95210 358 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 CH25HO95992 272 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 NHLRC4P0CG21 123 aaPredicted RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 HLA-EP13747 358 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 RPA2P15927 270 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ATP6V1C1P21283 382 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 PAICSP22234 425 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 SSTR1P30872 391 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 CORO1AP31146 461 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 ARRB2P32121 409 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 NSFP46459 744 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 MAT1AQ00266 395 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 TNFRSF17Q02223 184 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 HSF2Q03933 536 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ILF2Q12905 390 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 RFTN1Q14699 578 aaPredicted RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 FILIP1LQ4L180 1135 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 EARS2Q5JPH6 523 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 C6orf10Q5SRN2 563 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SPATA46Q5T0L3 261 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ZNF585AQ6P3V2 769 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 PLXDC2Q6UX71 529 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 FAM57BQ71RH2 274 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 TAS2R42Q7RTR8 314 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 AMIGO2Q86SJ2 522 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 PATL1Q86TB9 770 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 SERINC5Q86VE9 423 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 TMPRSS12Q86WS5 348 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ZDHHC21Q8IVQ6 265 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.36□□□□□ -1.552e-7■■■■■ 278.5
VPS53-219ENST00000576019 CENPLQ8N0S6 344 aaPredicted RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 THEM5Q8N1Q8 247 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 FADS6Q8N9I5 356 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 THAP8Q8NA92 274 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SMYD1Q8NB12 490 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 COLGALT1Q8NBJ5 622 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 TRIM58Q8NG06 486 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 OR2T3Q8NH03 318 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 CNOT6LQ96LI5 555 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 PSKH2Q96QS6 385 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 GFM1Q96RP9 751 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 ZBTB18Q99592 522 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 CMKLR1Q99788 373 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 KXD1Q9BQD3 176 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 TM6SF1Q9BZW5 370 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SPRY4Q9C004 299 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 GPR173Q9NS66 373 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 MIOSQ9NXC5 875 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SERGEFQ9UGK8 458 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 BAIAP2L1Q9UHR4 511 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 ADAM21Q9UKJ8 722 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 NDRG2Q9UN36 371 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 WDR83OSQ9Y284 106 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 KLK4Q9Y5K2 254 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 SPIN1Q9Y657 262 aaPredicted RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 DDX49Q9Y6V7 483 aaKnown RBP5.36□□□□□ -1.55
VPS53-219ENST00000576019 NRCAMQ92823 1304 aa5.36□□□□□ -1.55
VPS53-219ENST00000576019 A0A0U1RQV5 110 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 TMEM89A2RUT3 159 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 FAM47DPA6NHR8 397 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 A6NNC1 897 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 K7EQM0 130 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 HSPA12AO43301 675 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 SURF6O75683 361 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 RHOBTB1O94844 696 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CHRNB1P11230 501 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms