RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SACM1LQ9NTJ5 587 aa19.5■□□□□ 0.71
VPS53-216ENST00000574029 RNF14Q9UBS8 474 aa19.5■□□□□ 0.71
VPS53-216ENST00000574029 FAM215AQ9Y5M1 114 aa19.5■□□□□ 0.71
VPS53-216ENST00000574029 INTS1Q8N201 2190 aaKnown RBP19.49■□□□□ 0.71
VPS53-216ENST00000574029 FIGNL2A6NMB9 653 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 AQP7O14520 342 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 KLK8O60259 260 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 PIAS1O75925 651 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 CCDC166P0CW27 439 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 GLI4P10075 376 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 CD1EP15812 388 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 CD1DP15813 335 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 EPORP19235 508 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 E2F2Q14209 437 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 OR4D1Q15615 310 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 PAGE2BQ5JRK9 111 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 CES4AQ5XG92 561 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 RTL6Q6ICC9 239 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 ZNF585AQ6P3V2 769 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 FAM47EQ6ZV65 393 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 C17orf53Q8N3J3 647 aaPredicted RBP19.49■□□□□ 0.71
VPS53-216ENST00000574029 PDPRQ8NCN5 879 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 SRFBP1Q8NEF9 429 aaKnown RBP19.49■□□□□ 0.71
VPS53-216ENST00000574029 ZNF721Q8TF20 911 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 ANKRD9Q96BM1 317 aaPredicted RBP19.49■□□□□ 0.71
VPS53-216ENST00000574029 TSPAN17Q96FV3 270 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 TBCDQ9BTW9 1192 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 MS4A8Q9BY19 250 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 SLC24A3Q9HC58 644 aa19.49■□□□□ 0.71
VPS53-216ENST00000574029 PTBP2Q9UKA9 531 aaKnown RBP19.49■□□□□ 0.71
VPS53-216ENST00000574029 DNAJC13O75165 2243 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 SUSD5O60279 629 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ETHE1O95571 254 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ATP5A1P25705 553 aaKnown RBP19.48■□□□□ 0.71
VPS53-216ENST00000574029 DNASE1L1P49184 302 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ATP6V0D1P61421 351 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ETF1P62495 437 aaKnown RBP19.48■□□□□ 0.71
VPS53-216ENST00000574029 TBCCQ15814 346 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 MPEG1Q2M385 716 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 B3GNT6Q6ZMB0 384 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ZBED8Q8IZ13 594 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 CLYBLQ8N0X4 340 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ACOT4Q8N9L9 421 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 C7orf57Q8NEG2 295 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 ZNF473Q8WTR7 871 aaKnown RBP19.48■□□□□ 0.71
VPS53-216ENST00000574029 TRIM31Q9BZY9 425 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 TUBA8Q9NY65 449 aaPredicted RBP19.48■□□□□ 0.71
VPS53-216ENST00000574029 ATG4BQ9Y4P1 393 aa19.48■□□□□ 0.71
VPS53-216ENST00000574029 PHGDHO43175 533 aaKnown RBP19.47■□□□□ 0.71
VPS53-216ENST00000574029 SCELO95171 688 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 P04436 131 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 CELA3AP09093 270 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 CCL3P10147 92 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 CASP2P42575 452 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 MSH2P43246 934 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 ZFP36L2P47974 494 aaKnown RBP19.47■□□□□ 0.71
VPS53-216ENST00000574029 IGLV3-21P80748 117 aaPredicted RBP19.47■□□□□ 0.71
VPS53-216ENST00000574029 ID2Q02363 134 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 IRF8Q02556 426 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 CHIT1Q13231 466 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 HIST2H2ACQ16777 129 aaPredicted RBP19.47■□□□□ 0.71
VPS53-216ENST00000574029 TMEM35AQ53FP2 167 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 PIGGQ5H8A4 983 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 HIST2H2AA3Q6FI13 130 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 TMEM200AQ86VY9 491 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 OR10Q1Q8NGQ4 319 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 SEMA4BQ9NPR2 832 aaPredicted RBP19.47■□□□□ 0.71
VPS53-216ENST00000574029 CD274Q9NZQ7 290 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 COPS7AQ9UBW8 275 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 SPACA6W5XKT8 324 aa19.47■□□□□ 0.71
VPS53-216ENST00000574029 A0A0G2JNJ9 132 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 ATP6AP2A0A1C7CYW4 349 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 EFCAB8A8MWE9 144 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 CXorf49A8MYA2 514 aaPredicted RBP19.46■□□□□ 0.71
VPS53-216ENST00000574029 RTCAO00442 366 aaKnown RBP19.46■□□□□ 0.71
VPS53-216ENST00000574029 WDR1O75083 606 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 ATP6AP2O75787 350 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 KRT38O76015 456 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 HIST1H1TP22492 207 aaPredicted RBP19.46■□□□□ 0.71
VPS53-216ENST00000574029 MAN2A2P49641 1150 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 ART1P52961 327 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 SLC10A1Q14973 349 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 ZNF791Q3KP31 576 aaPredicted RBP19.46■□□□□ 0.71
VPS53-216ENST00000574029 LRRC70Q7Z2Q7 622 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 LAS2Q8IYD9 372 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 NUBPLQ8TB37 319 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 UBXN10Q96LJ8 280 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 GPR22Q99680 433 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 CD244Q9BZW8 370 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 SH2D2AQ9NP31 389 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 Q9UFV3 132 aa19.46■□□□□ 0.71
VPS53-216ENST00000574029 CCDC188H7C350 402 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 FGF17O60258 216 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 CCNT2O60583 730 aaKnown RBP19.45■□□□□ 0.7
VPS53-216ENST00000574029 HCN1O60741 890 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 IGKV3-11P04433 115 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 STMN1P16949 149 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 CPN2P22792 545 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 SSTR1P30872 391 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 DNAJA1P31689 397 aaKnown RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms