RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FGD3Q5JSP0 725 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 TPRG1LQ5T0D9 272 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 REEP3Q6NUK4 255 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 C6orf120Q7Z4R8 191 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 ARMC8Q8IUR7 673 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 SLC5A8Q8N695 610 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 SLC38A5Q8WUX1 472 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 GEMIN6Q8WXD5 167 aaKnown RBP19.25■□□□□ 0.67
CLN3-230ENST00000568076 SIPA1Q96FS4 1042 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 RHNO1Q9BSD3 238 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 FBRSQ9HAH7 460 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 A4GALTQ9NPC4 353 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 TMEM9Q9P0T7 183 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 TBC1D29Q9UFV1 150 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 SH3GLB1Q9Y371 365 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 DNAJB5O75953 348 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 IFNA14P01570 189 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 BCHEP06276 602 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 CD6P30203 668 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TMBIM6P55061 237 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 NUP107P57740 925 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TRA2BP62995 288 aaKnown RBP19.24■□□□□ 0.67
CLN3-230ENST00000568076 EXOC3L2Q2M3D2 409 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ADPRMQ3LIE5 342 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 NDUFAF5Q5TEU4 345 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 Q6ZPB1 254 aaPredicted RBP19.24■□□□□ 0.67
CLN3-230ENST00000568076 TMEM145Q8NBT3 493 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TTLQ8NG68 377 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 OR10G2Q8NGC3 310 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 PSMA8Q8TAA3 256 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 OR1E3Q8WZA6 343 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ZBED6CLQ96FA7 236 aaPredicted RBP19.24■□□□□ 0.67
CLN3-230ENST00000568076 OR2M4Q96R27 311 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 SERHL2Q9H4I8 314 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TAS2R7Q9NYW3 318 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ERVK-18Q9QC07 812 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 KLHL20Q9Y2M5 609 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ANHXE9PGG2 379 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 PCDHGA12O60330 932 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 CXCR4P61073 352 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 SLC35A2P78381 396 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TMEM35AQ53FP2 167 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 GPR153Q6NV75 609 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 DHRS4L2Q6PKH6 230 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ZNF605Q86T29 641 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 SLC30A8Q8IWU4 369 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 GAB3Q8WWW8 586 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 RAB8BQ92930 207 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 MS4A6EQ96DS6 147 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 TMEM19Q96HH6 336 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 MAGED4Q96JG8 741 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 HRASLS5Q96KN8 279 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 KCNC2Q96PR1 638 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 DGCR6LQ9BY27 220 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 CCDC90BQ9GZT6 254 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 DUSP21Q9H596 190 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 ACSS1Q9NUB1 689 aaPredicted RBP19.24■□□□□ 0.67
CLN3-230ENST00000568076 PNMA8BQ9ULN7 279 aaPredicted RBP19.24■□□□□ 0.67
CLN3-230ENST00000568076 PCDHGA6Q9Y5G7 932 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 SNX5Q9Y5X3 404 aa19.24■□□□□ 0.67
CLN3-230ENST00000568076 HMGN4O00479 90 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 INMTO95050 263 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 TFPTP0C1Z6 253 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ITGA2P17301 1181 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ITIH1P19827 911 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 CD247P20963 164 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 CD72P21854 359 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 AK4P27144 223 aaPredicted RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 LIMS1P48059 325 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 GP2P55259 537 aaKnown RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 EMX1Q04741 257 aaPredicted RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 PUM1Q14671 1186 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-230ENST00000568076 MICAQ29983 383 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 SPDYE7PQ495Y7 208 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ENTHD1Q8IYW4 607 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 APOBEC4Q8WW27 367 aaKnown RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 APH1BQ8WW43 257 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 CSF3RQ99062 836 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 PIP5K1AQ99755 562 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 NIPSNAP1Q9BPW8 284 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 GLIPR2Q9H4G4 154 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 PRDM7Q9NQW5 492 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 RASSF1Q9NS23 344 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ACER3Q9NUN7 267 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 PCDHGB1Q9Y5G3 927 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 WBP4O75554 376 aaKnown RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 GRK3P35626 688 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 STT3AP46977 705 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 KIAA1024LP59773 190 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ABATP80404 500 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 LRRC32Q14392 662 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 MLC1Q15049 377 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ENPP7Q6UWV6 458 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 SLC44A2Q8IWA5 706 aaPredicted RBP19.23■□□□□ 0.67
CLN3-230ENST00000568076 LGI4Q8N135 537 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 OR8K5Q8NH50 307 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 ASB12Q8WXK4 309 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 FKBP10Q96AY3 582 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 MRGPRX1Q96LB2 322 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 KIR3DX1Q9H7L2 352 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms