RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SPXQ9BT56 116 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 FGFBP2Q9BYJ0 223 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 DDX47Q9H0S4 455 aaKnown RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 TNMDQ9H2S6 317 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 DDX28Q9NUL7 540 aaKnown RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 NDUFA13Q9P0J0 144 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 MDFICQ9P1T7 246 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 THEGQ9P2T0 379 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 TRIM10Q9UDY6 481 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 CCNB3Q8WWL7 1395 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 ARHGAP35Q9NRY4 1499 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 CCDC69A6NI79 296 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 SHISA7A6NL88 538 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 TFECO14948 347 aaPredicted RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 NXPH4O95158 308 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 CT45A8P0DMV1 189 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 CT45A9P0DMV2 189 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 GPX3P22352 226 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 HNRNPFP52597 415 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 NDST2P52849 883 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 SLC12A3P55017 1021 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 ABCE1P61221 599 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 HERV-K104P63124 156 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 IRX1P78414 480 aaPredicted RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 RBBP4Q09028 425 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 WASHC5Q12768 1159 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 FASTKD3Q14CZ7 662 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 CT45A2Q5DJT8 189 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 PRAMEF7Q5VXH5 474 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 TRIM65Q6PJ69 517 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 C17orf64Q86WR6 236 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 AQP11Q8NBQ7 271 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 LIPHQ8WWY8 451 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 PCED1BQ96HM7 432 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 LINC00479Q96M42 142 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 AGAP4Q96P64 663 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 PINK1Q9BXM7 581 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 CARD9Q9H257 536 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 GANQ9H2C0 597 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 DPEP3Q9H4B8 488 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 SYTL2Q9HCH5 934 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 ACOXLQ9NUZ1 547 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 NDE1Q9NXR1 346 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 MRTO4Q9UKD2 239 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 RPH3AQ9Y2J0 694 aaPredicted RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 RPGRIP1LQ68CZ1 1315 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 PCF11O94913 1555 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 ABCA5Q8WWZ7 1642 aa3.94□□□□□ -1.78
LINC00560-201ENST00000564593 SUPT6HQ7KZ85 1726 aaKnown RBP3.94□□□□□ -1.78
LINC00560-201ENST00000564593 MEX3AA1L020 520 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TPBGLP0DKB5 382 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 GLRA1P23415 457 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 AHCYP23526 432 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 PKLRP30613 574 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 PITPNBP48739 271 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CLK1P49759 484 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 FHITP49789 147 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 GEMP55040 296 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SRP54P61011 504 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CALCOCO2Q13137 446 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 MSLNQ13421 630 aaPredicted RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 KIAA0141Q14154 515 aaPredicted RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 MEF2DQ14814 521 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 OR1C1Q15619 314 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 WSCD2Q2TBF2 565 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CEP85LQ5SZL2 805 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 ZC2HC1BQ5TFG8 222 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 DLEU7Q6UYE1 221 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 MIER3Q7Z3K6 550 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 BATF2Q8N1L9 274 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TMEM185AQ8NFB2 350 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 OR6M1Q8NGM8 313 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SLC13A3Q8WWT9 602 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 MRPL53Q96EL3 112 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 PKP2Q99959 881 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SYT11Q9BT88 431 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 WWP1Q9H0M0 922 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TRPV6Q9H1D0 765 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 VPS33BQ9H267 617 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 PLEKHA3Q9HB20 300 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 ASIC3Q9UHC3 531 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 MRPS2Q9Y399 296 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CARMIL1Q5VZK9 1371 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 PDS5BQ9NTI5 1447 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CCDC18Q5T9S5 1454 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TOPBP1Q92547 1522 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 IGHV3-20A0A0C4DH32 117 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 EEF2KO00418 725 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 CSO75390 466 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SEC22BO75396 215 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TXNDC12O95881 172 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SLC4A1P02730 911 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TRIM49P0CI25 452 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 TRIM49CP0CI26 452 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 RNF224P0DH78 156 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 SELEP16581 610 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 UGT1A4P22310 534 aa3.93□□□□□ -1.78
LINC00560-201ENST00000564593 RPL9P32969 192 aaKnown RBP3.93□□□□□ -1.78
LINC00560-201ENST00000564593 HILS1P60008 231 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms