RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ACSS1Q9NUB1 689 aaPredicted RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 KLHL28Q9NXS3 571 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 EHD3Q9NZN3 535 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 PLEKHB1Q9UF11 243 aaPredicted RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 PISDQ9UG56 409 aa4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 MYO5AQ9Y4I1 1855 aaKnown RBP4.88□□□□□ -1.63
VPS35P1-201ENST00000563400 HEATR9A2RTY3 570 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 VPS37CA5D8V6 355 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 OR6C75A6NL08 312 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 J3QR06 171 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 OR10H2O60403 315 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 KCNJ13O60928 360 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PLEKHA8P1O95397 391 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 GAS8O95995 478 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CHRNA1P02708 482 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 STAG3L1P0CL83 205 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PNMTP11086 282 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CCL5P13501 91 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 GNSP15586 552 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SRMP19623 302 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 HRH2P25021 359 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 YWHAQP27348 245 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 HTR2AP28223 471 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CYP2C18P33260 490 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 S100A5P33763 92 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 HSD17B3P37058 310 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ME1P48163 572 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CEBPDP49716 269 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CCL11P51671 97 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NLRP11P59045 1033 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SNRPEP62304 92 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 RASGEF1BQ0VAM2 473 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NFYCQ13952 458 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SSX2Q16385 188 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ACKR1Q16570 336 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CALCRLQ16602 461 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ANXA2RQ3ZCQ2 193 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 Q4G0T1 1027 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 VWA5B1Q5TIE3 1220 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 B3GNTL1Q67FW5 361 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PYHIN1Q6K0P9 492 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CBLN3Q6UW01 205 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SCARA5Q6ZMJ2 495 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LRRC55Q6ZSA7 311 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LINGO2Q7L985 606 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SLC16A9Q7RTY1 509 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM131BQ86XD5 332 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 VSTM4Q8IW00 320 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LRRC75A-AS1Q8N1F1 130 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF276Q8N554 614 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LRRC17Q8N6Y2 441 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ASCC1Q8N9N2 400 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LINC01356Q8N9X3 169 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 OR5D13Q8NGL4 314 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PPTC7Q8NI37 304 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 LKAAEAR1Q8TD35 194 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TBCKQ8TEA7 893 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 U2AF1L4Q8WU68 220 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CHPT1Q8WUD6 406 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TSEN15Q8WW01 171 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TCP11Q8WWU5 503 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF333Q96JL9 665 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 INPP4AQ96PE3 977 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 DEFB118Q96PH6 123 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SIGLEC11Q96RL6 698 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TIPINQ9BVW5 301 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ROPN1BQ9BZX4 212 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 IL25Q9H293 177 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZCCHC4Q9H5U6 513 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 DCLRE1BQ9H816 532 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ANKRA2Q9H9E1 313 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 RAB18Q9NP72 206 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 HINT3Q9NQE9 182 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NUDT15Q9NV35 164 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 VPS54Q9P1Q0 977 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF14Q9UBS8 474 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PSORS1C1Q9UIG5 152 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NOCTQ9UK39 431 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 RIPK3Q9Y572 518 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF646O15015 1829 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 UTRNP46939 3433 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 MYH4Q9Y623 1939 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NRCAMQ92823 1304 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM240BA0A1B0GVZ2 78 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 METTL21EPA6NDL7 271 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NEMP2A6NFY4 417 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM191CA6NGB0 347 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TMCO5BA8MYB1 307 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 WASH3PC4AMC7 463 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 GOLGA8TH3BQL2 631 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PSMD11O00231 422 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PDXKO00764 312 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CYTH3O43739 400 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 EXTL3O43909 919 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TRIM3O75382 744 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CNMDO75829 334 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NEBLO76041 1014 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 RGS11O94810 467 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 C9P02748 559 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms