RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ITLN2	Q8WWU7	325 aa	Predicted RBP	13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	MARVELD3	Q96A59	401 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	NXNL1	Q96CM4	212 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	RBM18	Q96H35	190 aa	Known RBP	13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	DGAT2	Q96PD7	388 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	FMO2	Q99518	471 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	HES7	Q9BYE0	225 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	OR8D2	Q9GZM6	311 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	RPF2	Q9H7B2	306 aa	Known RBP	13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	ZDHHC18	Q9NUE0	388 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	COQ3	Q9NZJ6	369 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	SH3BGRL2	Q9UJC5	107 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	CREBBP	Q92793	2442 aa		13.11	□□□□□ -0.31
TPM1-223	ENST00000560445	ESYT3	A0FGR9	886 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445		E9PLN8	166 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	KLK8	O60259	260 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	MAN1A2	O60476	641 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	TGFB1	P01137	390 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CTAGE8	P0CG41	777 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	EPOR	P19235	508 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	STT3A	P46977	705 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	GPR143	P51810	404 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	TNFRSF17	Q02223	184 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	DDX39B	Q13838	428 aa	Known RBP	13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	TRADD	Q15628	312 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	FBXO48	Q5FWF7	155 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	NDUFAF5	Q5TEU4	345 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	TMEM211	Q6ICI0	200 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CYP20A1	Q6UW02	462 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	GPR180	Q86V85	440 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	SLC22A16	Q86VW1	577 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	NUDT13	Q86X67	352 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	TICAM1	Q8IUC6	712 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CTAGE4	Q8IX94	777 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CENPL	Q8N0S6	344 aa	Predicted RBP	13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	SHISA5	Q8N114	240 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	MMGT1	Q8N4V1	131 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CPSF7	Q8N684	471 aa	Known RBP	13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	PSD4	Q8NDX1	1056 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	HUS1B	Q8NHY5	278 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	SLC22A8	Q8TCC7	542 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	ATP6V1E2	Q96A05	226 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	VKORC1	Q9BQB6	163 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	VPS11	Q9H270	941 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	DMRT3	Q9NQL9	472 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	AHSP	Q9NZD4	102 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	KCMF1	Q9P0J7	381 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	CPSF2	Q9P2I0	782 aa	Known RBP	13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	PPT2	Q9UMR5	302 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	MEMO1	Q9Y316	297 aa		13.1	□□□□□ -0.31
TPM1-223	ENST00000560445	FOXE1	O00358	373 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PRAMEF4	O60810	478 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	GUCY1B2	O75343	617 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	OR2J2	O76002	312 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SEMA3D	O95025	777 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	CLDN9	O95484	217 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	TBX6	O95947	436 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	COX6B1	P14854	86 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	COL8A1	P27658	744 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	HTR1E	P28566	365 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PTGS2	P35354	604 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PLGLB1	Q02325	96 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	DLG1	Q12959	904 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SLAMF1	Q13291	335 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	GTF2H2	Q13888	395 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	C3AR1	Q16581	482 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF630	Q2M218	657 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	MPEG1	Q2M385	716 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	C6orf163	Q5TEZ5	329 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	CROCC	Q5TZA2	2017 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF468	Q5VIY5	522 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PRAMEF9	Q5VWM5	478 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	GTF2H2C	Q6P1K8	395 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PAGE2	Q7Z2X7	111 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	LCA5	Q86VQ0	697 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SULF2	Q8IWU5	870 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SLC15A4	Q8N697	577 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	C16orf52	Q8NHV5	167 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	NUBPL	Q8TB37	319 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SLC2A12	Q8TD20	617 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	PTPMT1	Q8WUK0	201 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	IFT81	Q8WYA0	676 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	MRRF	Q96E11	262 aa	Known RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	CSF3R	Q99062	836 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	SERPINI1	Q99574	410 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	MAPKAP1	Q9BPZ7	522 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	FUT8	Q9BYC5	575 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	IPPK	Q9H8X2	491 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	NMRK1	Q9NWW6	199 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	NINJ2	Q9NZG7	142 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	TINAG	Q9UJW2	476 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	ZNF180	Q9UJW8	692 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	ITPR2	Q14571	2701 aa		13.09	□□□□□ -0.31
TPM1-223	ENST00000560445	CACNA1D	Q01668	2161 aa		13.08	□□□□□ -0.31
TPM1-223	ENST00000560445		A0A087WUV0	522 aa	Predicted RBP	13.08	□□□□□ -0.32
TPM1-223	ENST00000560445	ARHGAP10	A1A4S6	786 aa		13.08	□□□□□ -0.32
TPM1-223	ENST00000560445	OR6C76	A6NM76	312 aa		13.08	□□□□□ -0.32
TPM1-223	ENST00000560445	STX16-NPEPL1	H3BU86	382 aa		13.08	□□□□□ -0.32
TPM1-223	ENST00000560445	STX16	O14662	325 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms