RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PHF11Q9UIL8 331 aa12□□□□□ -0.49
USP3-213ENST00000559711 RPS6KA6Q9UK32 745 aa12□□□□□ -0.49
USP3-213ENST00000559711 SNX8Q9Y5X2 465 aa12□□□□□ -0.49
USP3-213ENST00000559711 ABCA7Q8IZY2 2146 aa12□□□□□ -0.49
USP3-213ENST00000559711 A0A1B0GTW7 788 aa12□□□□□ -0.49
USP3-213ENST00000559711 GLOD5A6NK44 160 aa12□□□□□ -0.49
USP3-213ENST00000559711 UPK1AO00322 258 aa12□□□□□ -0.49
USP3-213ENST00000559711 DENRO43583 198 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 SDC3O75056 442 aa12□□□□□ -0.49
USP3-213ENST00000559711 PRKRAO75569 313 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 GCM2O75603 506 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 MT-ND1P03886 318 aa12□□□□□ -0.49
USP3-213ENST00000559711 CDH3P22223 829 aa12□□□□□ -0.49
USP3-213ENST00000559711 NTSP30990 170 aa12□□□□□ -0.49
USP3-213ENST00000559711 SOAT1P35610 550 aa12□□□□□ -0.49
USP3-213ENST00000559711 MAGEA2P43356 314 aa12□□□□□ -0.49
USP3-213ENST00000559711 RXRGP48443 463 aa12□□□□□ -0.49
USP3-213ENST00000559711 CDK9P50750 372 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 EPHA4P54764 986 aa12□□□□□ -0.49
USP3-213ENST00000559711 FOLH1Q04609 750 aa12□□□□□ -0.49
USP3-213ENST00000559711 BIRC2Q13490 618 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZNF630Q2M218 657 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 DEFB134Q4QY38 66 aa12□□□□□ -0.49
USP3-213ENST00000559711 TMTC4Q5T4D3 741 aa12□□□□□ -0.49
USP3-213ENST00000559711 LYSMD4Q5XG99 296 aa12□□□□□ -0.49
USP3-213ENST00000559711 PMS2CLQ68D20 193 aa12□□□□□ -0.49
USP3-213ENST00000559711 IRGCQ6NXR0 463 aa12□□□□□ -0.49
USP3-213ENST00000559711 ANGPTL8Q6UXH0 198 aa12□□□□□ -0.49
USP3-213ENST00000559711 CCDC80Q76M96 950 aa12□□□□□ -0.49
USP3-213ENST00000559711 C11orf74Q86VG3 221 aa12□□□□□ -0.49
USP3-213ENST00000559711 EPHX4Q8IUS5 362 aa12□□□□□ -0.49
USP3-213ENST00000559711 DNAJC22Q8N4W6 341 aa12□□□□□ -0.49
USP3-213ENST00000559711 CSNK1A1LQ8N752 337 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZFP28Q8NHY6 868 aa12□□□□□ -0.49
USP3-213ENST00000559711 SUN3Q8TAQ9 357 aa12□□□□□ -0.49
USP3-213ENST00000559711 KLHL6Q8WZ60 621 aa12□□□□□ -0.49
USP3-213ENST00000559711 EDAQ92838 391 aa12□□□□□ -0.49
USP3-213ENST00000559711 MAL2Q969L2 176 aa12□□□□□ -0.49
USP3-213ENST00000559711 CNRIP1Q96F85 164 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 C10orf90Q96M02 699 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZNF681Q96N22 645 aa12□□□□□ -0.49
USP3-213ENST00000559711 NR1H4Q96RI1 486 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 BBS4Q96RK4 519 aa12□□□□□ -0.49
USP3-213ENST00000559711 RAB33BQ9H082 229 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZSCAN32Q9NX65 697 aa12□□□□□ -0.49
USP3-213ENST00000559711 DNAJB9Q9UBS3 223 aa12□□□□□ -0.49
USP3-213ENST00000559711 PSME2Q9UL46 239 aa12□□□□□ -0.49
USP3-213ENST00000559711 OAZ3Q9UMX2 235 aa12□□□□□ -0.49
USP3-213ENST00000559711 DAPP1Q9UN19 280 aa12□□□□□ -0.49
USP3-213ENST00000559711 MAP4K5Q9Y4K4 846 aa12□□□□□ -0.49
USP3-213ENST00000559711 SLC22A7Q9Y694 548 aa12□□□□□ -0.49
USP3-213ENST00000559711 C7orf72A4D263 438 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 SLC9B1P1A6NJY1 282 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 SAC3D1A6NKF1 404 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 SOCS2O14508 198 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 B3GALT2O43825 422 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 B4GALT2O60909 372 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 SNRNP200O75643 2136 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 SEMG1P04279 462 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 EIF2S1P05198 315 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 ARAFP10398 606 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 NR2F6P10588 404 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 CSNK2A2P19784 350 aaPredicted RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 BUD31P41223 144 aaPredicted RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 MAGEA8P43361 318 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 CCT3P49368 545 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 PRIM2P49643 509 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 NCBP2P52298 156 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP3-213ENST00000559711 CRYBA2P53672 197 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 LIM2P55344 173 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 BNC1Q01954 994 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 TNFRSF17Q02223 184 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 HSPB3Q12988 150 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 RUNX2Q13950 521 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 ELOAQ14241 798 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 LRRC23Q53EV4 343 aaPredicted RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 ZC3H12BQ5HYM0 836 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 C6orf132Q5T0Z8 1188 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 TMEM64Q6YI46 380 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 C6orf120Q7Z4R8 191 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 MCATQ8IVS2 390 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 SLC25A45Q8N413 288 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 ARHGEF39Q8N4T4 335 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 CBR4Q8N4T8 237 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 ZCCHC10Q8TBK6 192 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 TCTN2Q96GX1 697 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 TMEM121BQ9BXQ6 578 aaPredicted RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 CHRNA10Q9GZZ6 450 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 IL21RQ9HBE5 538 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 LYRM4Q9HD34 91 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 DNAAF2Q9NVR5 837 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 MS4A12Q9NXJ0 267 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 PADI4Q9UM07 663 aa11.99□□□□□ -0.49
USP3-213ENST00000559711 MRPS2Q9Y399 296 aaKnown RBP11.99□□□□□ -0.49
USP3-213ENST00000559711 DNAH14Q0VDD8 3507 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 TXNDC9O14530 226 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 LAMTOR5O43504 91 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 HCRTR1O43613 425 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 SRPX2O60687 465 aaPredicted RBP11.98□□□□□ -0.49
USP3-213ENST00000559711 ERAL1O75616 437 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms