RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SLC9B1Q4ZJI4 515 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 RFTN2Q52LD8 501 aaPredicted RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 VWA2Q5GFL6 755 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 NDUFAF5Q5TEU4 345 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 OR52E8Q6IFG1 317 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 FAM198BQ6UWH4 519 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 COX15Q7KZN9 410 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ZC3H7AQ8IWR0 971 aaKnown RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 OR4K14Q8NGD5 310 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 OR5T3Q8NGG3 340 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 MTERF3Q96E29 417 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 C11orf24Q96F05 449 aaPredicted RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 PTCHD1Q96NR3 888 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ZBTB18Q99592 522 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 CRB3Q9BUF7 120 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 EBPLQ9BY08 206 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 DPY30Q9C005 99 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 EPN3Q9H201 632 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 RABEP2Q9H5N1 569 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 WDR55Q9H6Y2 383 aaPredicted RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 MIEF1Q9NQG6 463 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 SLC22A11Q9NSA0 550 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ATAD3AQ9NVI7 634 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 EHD3Q9NZN3 535 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 DCTN4Q9UJW0 460 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 C3orf18Q9UK00 162 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 TCFL5Q9UL49 500 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 MKL2Q9ULH7 1088 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 PTGDR2Q9Y5Y4 395 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ZNF780BQ9Y6R6 833 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 CFAP47Q6ZTR5 3102 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 IGF2RP11717 2491 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 A0A1W2PR48 441 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 ZNF891A8MT65 544 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 CYR61O00622 381 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 PEX12O00623 359 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 KLK10O43240 276 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 ALOX12BO75342 701 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CREG1O75629 220 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 GBAP04062 536 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 JUNP05412 331 aaKnown RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 IL3P08700 152 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 ALDH9A1P49189 494 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CLDN8P56748 225 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 AP2B1P63010 937 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CLN3Q13286 438 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 NSDHLQ15738 373 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 DPY19L1Q2PZI1 675 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 LSM12Q3MHD2 195 aaKnown RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 CRTC2Q53ET0 693 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 C6orf163Q5TEZ5 329 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 VWA5B1Q5TIE3 1220 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 FAM71E1Q6IPT2 247 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 LCN10Q6JVE6 187 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 PROSER1Q86XN7 944 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 LIX1Q8N485 282 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 DTWD1Q8N5C7 304 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 GLB1L3Q8NCI6 653 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 CDC26Q8NHZ8 85 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 RNF31Q96EP0 1072 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 RBM18Q96H35 190 aaKnown RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 ZNF764Q96H86 408 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 SLC45A3Q96JT2 553 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CCNL2Q96S94 520 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 ELAC2Q9BQ52 826 aaKnown RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 C1orf50Q9BV19 199 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 REEP4Q9H6H4 257 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 SOX17Q9H6I2 414 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 AKIRIN1Q9H9L7 192 aaPredicted RBP8.69□□□□□ -1.02
LDLR-210ENST00000559340 TMEM45AQ9NWC5 275 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CTSFQ9UBX1 484 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 ENTPD4Q9Y227 616 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 ATG4BQ9Y4P1 393 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 MED13Q9UHV7 2174 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 CNTRLQ7Z7A1 2325 aa8.69□□□□□ -1.02
LDLR-210ENST00000559340 IDSB3KWA1 339 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 FAM227AF5H4B4 570 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 TLX3O43711 291 aaPredicted RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 TBX19O60806 448 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 CCDC22O60826 627 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 KLF7O75840 302 aaPredicted RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 GPR75O95800 540 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 AIFM1O95831 613 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 C8orf89P0DMQ9 161 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 G6PDP11413 515 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 COX7A2P14406 83 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 LIFP15018 202 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SDC1P18827 310 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 TNNI3P19429 210 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 CSNK2A2P19784 350 aaPredicted RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 DDCP20711 480 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 MMP11P24347 488 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 EIF2S3P41091 472 aaKnown RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 ATP4BP51164 291 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SEC24CP53992 1094 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 SRSF11Q05519 484 aaKnown RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 ERV3-1Q14264 604 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 TGIF1Q15583 401 aa8.68□□□□□ -1.02
LDLR-210ENST00000559340 PDCD4Q53EL6 469 aaKnown RBP8.68□□□□□ -1.02
LDLR-210ENST00000559340 CPTPQ5TA50 214 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms