RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 ERGIC2Q96RQ1 377 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 SLC39A8Q9C0K1 460 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 LIME1Q9H400 295 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF665Q9H7R5 613 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 SRD5A3Q9H8P0 318 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 TUFT1Q9NNX1 390 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 CUTCQ9NTM9 273 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 ABCD2Q9UBJ2 740 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 GTF3C4Q9UKN8 822 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 SLC6A5Q9Y345 797 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 FBXO7Q9Y3I1 522 aa2.74□□□□□ -1.97
VPS13C-207ENST00000558919 A0A1W2PNU3 283 aaPredicted RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 FAM168BA1KXE4 195 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 MAGEB16A2A368 324 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 CSDE1O75534 798 aaKnown RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 KLK2P20151 261 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 FRKP42685 505 aaPredicted RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 POU5F1Q01860 360 aaKnown RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 NAAAQ02083 359 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 BFSP1Q12934 665 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 RFWD3Q6PCD5 774 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 PODNL1Q6PEZ8 512 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF730Q6ZMV8 503 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 SAMD12Q8N8I0 201 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 OR6T1Q8NGN1 323 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 FLVCR1-AS1Q8TAF5 88 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 SNRNP40Q96DI7 357 aaKnown RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 ZMAT2Q96NC0 199 aaKnown RBP2.73□□□□□ -1.97
VPS13C-207ENST00000558919 LRRC2Q9BYS8 371 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 CUEDC2Q9H467 287 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 NT5DC2Q9H857 520 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 DHRS4-AS1Q9P1J3 65 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 NRBP1Q9UHY1 535 aa2.73□□□□□ -1.97
VPS13C-207ENST00000558919 A0A087X0K7 114 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ATP6AP2A0A1C7CYW4 349 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SYT7O43581 403 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SRPX2O60687 465 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF253O75346 499 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 OR6A2O95222 327 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 OR9G9P0C7N8 305 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SUPT20HL2P0C7V6 817 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ODC1P11926 461 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 GJB2P29033 226 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 BRCC3P46736 316 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 KCNJ1P48048 391 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 TSPY1Q01534 308 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SLC34A1Q06495 639 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ACKR1Q16570 336 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SNRNP48Q6IEG0 339 aaKnown RBP2.72□□□□□ -1.97
VPS13C-207ENST00000558919 CAPN13Q6MZZ7 669 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SIGLEC15Q6ZMC9 328 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF600Q6ZNG1 722 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 CCDC71Q8IV32 467 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-207ENST00000558919 SIAH3Q8IW03 269 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 KLHDC8AQ8IYD2 350 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 GVQW1Q8N7I0 195 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ATAD1Q8NBU5 361 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 TCP11Q8WWU5 503 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 NTNG2Q96CW9 530 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 CYYR1Q96J86 154 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 CCDC114Q96M63 670 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ZBP1Q9H171 429 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ZCCHC17Q9NP64 241 aaKnown RBP2.72□□□□□ -1.97
VPS13C-207ENST00000558919 TMEM161AQ9NX61 479 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 PLEK2Q9NYT0 353 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 CELA1Q9UNI1 258 aa2.72□□□□□ -1.97
VPS13C-207ENST00000558919 ZNF487B1APH4 448 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 KIAA0513O60268 411 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 GH1P01241 217 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 PIGRP01833 764 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 GSTA2P09210 222 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 C8orf89P0DMQ9 161 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 FOSL2P15408 326 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 GLRA1P23415 457 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 OR1D2P34982 312 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 ALDH3B1P43353 468 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 ADARP55265 1226 aaKnown RBP2.71□□□□□ -1.98
VPS13C-207ENST00000558919 LYZP61626 148 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 GABPAQ06546 454 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 MEF2DQ14814 521 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 SLC17A1Q14916 467 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 SPHARQ15513 63 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 C17orf58Q2M2W7 97 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 TIMM50Q3ZCQ8 353 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 LRRC38Q5VT99 294 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 SHQ1Q6PI26 577 aaKnown RBP2.71□□□□□ -1.98
VPS13C-207ENST00000558919 NHLRC1Q6VVB1 395 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 C17orf64Q86WR6 236 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 AQP12AQ8IXF9 295 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 RBM18Q96H35 190 aaKnown RBP2.71□□□□□ -1.98
VPS13C-207ENST00000558919 SPATA17Q96L03 361 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 RAB40CQ96S21 281 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 SSX3Q99909 188 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 DPEP3Q9H4B8 488 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 ARMCX3Q9UH62 379 aaPredicted RBP2.71□□□□□ -1.98
VPS13C-207ENST00000558919 FBXL5Q9UKA1 691 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 EXOC6BQ9Y2D4 811 aa2.71□□□□□ -1.98
VPS13C-207ENST00000558919 ACEP12821 1306 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 TRAV9-2A0A087WT02 112 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 FAM149AA5PLN7 773 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms