RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DEF8Q6ZN54 512 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 HOMEZQ8IX15 550 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 IQCF1Q8N6M8 205 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 Q8N9G6 341 aaPredicted RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 DENND6BQ8NEG7 585 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 FCGR1BQ92637 280 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 EXOSC8Q96B26 276 aaKnown RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 TRMT61AQ96FX7 289 aaKnown RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 METTL2AQ96IZ6 378 aaKnown RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 DOCK9Q9BZ29 2069 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 ABHD14A-ACY1A0A1B0GW23 586 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TSPAN11A1L157 253 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 IFNW1P05000 195 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 ALPPL2P10696 532 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 C6P13671 934 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 EPCAMP16422 314 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 LIMK1P53667 647 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CRISP1P54107 249 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CSNK2BP67870 215 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TUBA1BP68363 451 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 IRF3Q14653 427 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 NUMA1Q14980 2115 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 DESI1Q6ICB0 168 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TUBA1AQ71U36 451 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 ATCAYQ86WG3 371 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 KLHDC8AQ8IYD2 350 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 OR5D16Q8NGK9 328 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 REPS1Q96D71 796 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 RSPRY1Q96DX4 576 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TMEM19Q96HH6 336 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 ZNF717Q9BY31 904 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 TRIOO75962 3097 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 GLOD5A6NK44 160 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 H7BY64 318 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 LATO43561 262 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 MRPS14O60783 128 aaKnown RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 FKTNO75072 461 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 APOL3O95236 402 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 NTN1O95631 604 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 ACADLP28330 430 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 UGT2B10P36537 528 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 DGKGP49619 791 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PIN1Q13526 163 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 ZNF630Q2M218 657 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 HIST2H2AA3Q6FI13 130 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TCTN3Q6NUS6 607 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 LINC00299Q6ZSB3 139 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 C11orf96Q7Z7L8 435 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 SLC9B2Q86UD5 537 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 AMER2Q8N7J2 671 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CELF2-AS1Q8N7Q2 184 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PRAP1Q96NZ9 151 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PRR14Q9BWN1 585 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 LGR4Q9BXB1 951 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 EXOSC4Q9NPD3 245 aaKnown RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 KIAA1671Q9BY89 1806 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PRAMEF27A3QJZ7 478 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 ZAR1LA6NP61 321 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 QSOX1O00391 747 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 SH3BP5O60239 455 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CEBPBP17676 345 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 SERPINB1P30740 379 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 MANFP55145 182 aaKnown RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 RBBP4Q09028 425 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 KCNJ8Q15842 424 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PRAMEF14Q5SWL7 426 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PRAMEF13Q5VWM6 474 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CCDC80Q76M96 950 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 KIAA0907Q7Z7F0 614 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 C11orf74Q86VG3 221 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 APOBEC4Q8WW27 367 aaKnown RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 TRIM43Q96BQ3 446 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 RAD9AQ99638 391 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 CNPPD1Q9BV87 410 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TPK1Q9H3S4 243 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 MVB12BQ9H7P6 319 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 TEX10Q9NXF1 929 aaPredicted RBP12.26□□□□□ -0.45
LDLR-207ENST00000558013 SAGE1Q9NXZ1 904 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 LRRK1Q38SD2 2015 aa12.26□□□□□ -0.45
LDLR-207ENST00000558013 PNMA8CA0A1B0GUJ8 204 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 SMIM30A4D0T7 59 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 H3BN98 237 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 LZTS3O60299 673 aaPredicted RBP12.25□□□□□ -0.45
LDLR-207ENST00000558013 PAPLNO95428 1278 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 CYP17A1P05093 508 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 CISD3P0C7P0 127 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 PCSK2P16519 638 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 ITGA2P17301 1181 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 RCVRNP35243 200 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 HMGA2P52926 109 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 UGT2B15P54855 530 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 CDC42P60953 191 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 SYPL1Q16563 259 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 REEP3Q6NUK4 255 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 GDPD3Q7L5L3 318 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 DEPDC4Q8N2C3 294 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 CXorf40BQ96DE9 158 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 NUS1Q96E22 293 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 WDR34Q96EX3 536 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 SERHL2Q9H4I8 314 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms