RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	GPR68	Q15743	365 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	UBXN11	Q5T124	520 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	OTUD1	Q5VV17	481 aa	Predicted RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TSPAN33	Q86UF1	283 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	CCDC36	Q8IYA8	594 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	CELF5	Q8N6W0	485 aa	Known RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	BOLL	Q8N9W6	283 aa	Known RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR5H6	Q8NGV6	325 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SPRYD4	Q8WW59	207 aa	Predicted RBP	4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TXNDC15	Q96J42	360 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RHNO1	Q9BSD3	238 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	AMBRA1	Q9C0C7	1298 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	LRRN3	Q9H3W5	708 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	TRIM36	Q9NQ86	728 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	FNIP2	Q9P278	1114 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	RABL2B	Q9UNT1	228 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	SSC5D	A1L4H1	1573 aa		4.78	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR14I1	A6ND48	311 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	METTL15	A6NJ78	407 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRRC72	A6NJI9	287 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SOBP	A7XYQ1	873 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	GRXCR1	A8MXD5	290 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ANHX	E9PGG2	379 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM227A	F5H4B4	570 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	QSOX1	O00391	747 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CTDSP2	O14595	271 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TAPBP	O15533	448 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	NARS	O43776	548 aa	Known RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF432	O94892	652 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	GAST	P01350	101 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	IFNA16	P05015	189 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	RET	P07949	1114 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	VIPR1	P32241	457 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	KDELR2	P33947	212 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	UGT2B10	P36537	528 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ACVR1B	P36896	505 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	MLLT6	P55198	1093 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CLDN8	P56748	225 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	GK2	Q14410	553 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF791	Q3KP31	576 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM107	Q6UX40	140 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ALKAL1	Q6UXT8	129 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CEACAM19	Q7Z692	300 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ADGRD2	Q7Z7M1	963 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	PGBD3	Q8N328	593 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TTC9B	Q8N6N2	239 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR4C6	Q8NH72	309 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TRMT10A	Q8TBZ6	339 aa	Known RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC5A11	Q8WWX8	675 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	RHBDF1	Q96CC6	855 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	KCNK12	Q9HB15	430 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	MRPS30	Q9NP92	439 aa	Known RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	IFT46	Q9NQC8	304 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	PLSCR3	Q9NRY6	295 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TRBV4-1	A0A0J9YWV2	114 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	MROH6	A6NGR9	719 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC35G4	P0C7Q5	338 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ALPPL2	P10696	532 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	JUP	P14923	745 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	RHCE	P18577	417 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ATF6	P18850	670 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CBL	P22681	906 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TLX1	P31314	330 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ETV3	P41162	512 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	DNASE1L1	P49184	302 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	BTN3A2	P78410	334 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNHIT3	Q15649	155 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	NTRK2	Q16620	822 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF630	Q2M218	657 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRIT3	Q3SXY7	679 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	XKR4	Q5GH76	650 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LIPJ	Q5W064	366 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC25A25	Q6KCM7	469 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	GDPD4	Q6W3E5	623 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	OTOP2	Q7RTS6	562 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM124A	Q86V42	546 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRRTM3	Q86VH5	581 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	APCDD1	Q8J025	514 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF548	Q8NEK5	533 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZMIZ2	Q8NF64	920 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	DOK4	Q8TEW6	326 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	FCAMR	Q8WWV6	532 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	LRR1	Q96L50	414 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	TRIB3	Q96RU7	358 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	NDC1	Q9BTX1	674 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF385D	Q9H6B1	395 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	ASAH2	Q9NR71	780 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	FBXL3	Q9UKT7	428 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CDH7	Q9ULB5	785 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	QSER1	Q2KHR3	1735 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	REM1	O75628	298 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	RPLP2	P05387	115 aa	Known RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CLEC2L	P0C7M8	214 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CD9	P21926	228 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CCND3	P30281	292 aa	Predicted RBP	4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	PCGF2	P35227	344 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	CCR8	P51685	355 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	SGSH	P51688	502 aa		4.77	□□□□□ -1.65
SYNE2-223	ENST00000557005	GBX2	P52951	348 aa	Predicted RBP	4.77	□□□□□ -1.65

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