RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FBXO30Q8TB52 745 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FCGR1BQ92637 280 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PYCR2Q96C36 320 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 EID2BQ96D98 161 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLC47A1Q96FL8 570 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PDLIM5Q96HC4 596 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CEP19Q96LK0 163 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TBATAQ96M53 351 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 COQ10AQ96MF6 247 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 NEDD4LQ96PU5 975 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FYTTD1Q96QD9 318 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR2A14Q96R47 310 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 C17orf62Q9BQA9 187 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LGR4Q9BXB1 951 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TCEAL2Q9H3H9 227 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ERVMER34-1Q9H9K5 563 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLAMF8Q9P0V8 285 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CD84Q9UIB8 345 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PCOLCE2Q9UKZ9 415 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 RNF6Q9Y252 685 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 GPR45Q9Y5Y3 372 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR6C70A6NIJ9 312 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LEUTXA8MZ59 168 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SCAMP1O15126 338 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GSTA4O15217 222 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 PCDHGA12O60330 932 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SLITRK5O94991 958 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GOT2P00505 430 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 FGF4P08620 206 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CEACAM1P13688 526 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 PRKACAP17612 351 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ITGB6P18564 788 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CSRP1P21291 193 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 PRKACGP22612 351 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GADD45AP24522 165 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 EPHA8P29322 1005 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SOX6P35712 828 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LIPAP38571 399 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 DCTP40126 519 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SLC1A2P43004 574 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RABIFP47224 123 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ARRB1P49407 418 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ARSDP51689 593 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 POLR2JP52435 117 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 DIO3P55073 304 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CDH13P55290 713 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 HERVK_113P63132 956 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SH3BP2P78314 561 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 FAPQ12884 760 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 KEAP1Q14145 624 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 AGERQ15109 404 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TCEA2Q15560 299 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TAF1AQ15573 450 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 UNC50Q53HI1 259 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ENPP6Q6UWR7 440 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 USP45Q70EL2 814 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 KANSL1Q7Z3B3 1105 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SPATA19Q7Z5L4 167 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GALNT7Q86SF2 657 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CCDC190Q86UF4 302 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 PNPLA1Q8N8W4 532 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 OR13C4Q8NGS5 318 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RHBDD1Q8TEB9 315 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 IPCEF1Q8WWN9 437 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 DEDD2Q8WXF8 326 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SCAMP4Q969E2 229 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CCDC120Q96HB5 630 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SDHCQ99643 169 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 C1QTNF7Q9BXJ2 289 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ERVK-6Q9BXR3 956 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 UCK2Q9BZX2 261 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ACTR8Q9H981 624 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF556Q9HAH1 456 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 BPIFA1Q9NP55 256 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 MID1IP1Q9NPA3 183 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ERVK13-1Q9NX77 482 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 AASSQ9UDR5 926 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 NUFIP1Q9UHK0 495 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 POLG2Q9UHN1 485 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TMEFF2Q9UIK5 374 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TRAPPC4Q9Y296 219 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TMEM202A6NGA9 273 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 OR51F1A6NGY5 319 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TFECO14948 347 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 STX7O15400 261 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SLC22A3O75751 556 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RPLP0P05388 317 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 C1SP09871 688 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LINC00032P0C843 101 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GIMD1P0DJR0 217 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 PSKH1P11801 424 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LPOP22079 712 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CBLP22681 906 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 DGKAP23743 735 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 IGFBP5P24593 272 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 MLLT3P42568 568 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SIM1P81133 766 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CD83Q01151 205 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TRIP6Q15654 476 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ARMCX4Q5H9R4 360 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms