RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 Q6ZPB1 254 aaPredicted RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 LMX1AQ8TE12 382 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 SNX33Q8WV41 574 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 NXPE3Q969Y0 559 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 COX4I2Q96KJ9 171 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 WDR92Q96MX6 357 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 RPL36Q9Y3U8 105 aaKnown RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 H7C0S8 307 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 MPZL2O60487 215 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 C1orf105O95561 183 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 PIM1P11309 404 aaPredicted RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 MYF6P23409 242 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 GJA4P35212 333 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 GJA8P48165 433 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 BLKP51451 505 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 ACVR1Q04771 509 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 IL18Q14116 193 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 TRIM43Q96BQ3 446 aaPredicted RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 SLC6A17Q9H1V8 727 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 DCAF13Q9NV06 445 aaKnown RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 PCDHA9Q9Y5H5 950 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 A0A1B0GTW7 788 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 M0R3H8 397 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 HBA1P69905 142 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 PIN1Q13526 163 aaPredicted RBP14.33□□□□□ -0.12
CUX1-214ENST00000550008 SLC30A6Q6NXT4 461 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 FAM92BQ6ZTR7 304 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 KLHL6Q8WZ60 621 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 DPYSL5Q9BPU6 564 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 ABCG4Q9H172 646 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 CLMPQ9H6B4 373 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 DMRT3Q9NQL9 472 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 STMN3Q9NZ72 180 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 TBX21Q9UL17 535 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 CDH7Q9ULB5 785 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 MKL2Q9ULH7 1088 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 FAM92AA1XBS5 289 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CPED1A4D0V7 1026 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 EIF3FO00303 357 aaPredicted RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 ARNTLO00327 626 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CDK3Q00526 305 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ZNF267Q14586 743 aaPredicted RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 FIGNL1Q6PIW4 674 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ABHD13Q7L211 337 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SIX5Q8N196 739 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CHFRQ96EP1 664 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ITPAQ9BY32 194 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SLC6A16Q9GZN6 736 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 EHD1Q9H4M9 534 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 MAFFQ9ULX9 164 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 TRIOBPQ9H2D6 2365 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 FAM47E-STBD1D6RA91 191 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 MCIDASD6RGH6 385 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 PGRMC2O15173 223 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ACADLP28330 430 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CSNK1DP48730 415 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 FADDQ13158 208 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 DNASE1L3Q13609 305 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ADNP2Q6IQ32 1131 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 NUP43Q8NFH3 380 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 GPR83Q9NYM4 423 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 HSFX1Q9UBD0 423 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 LINC01553A4QN01 128 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SLC9A3P48764 834 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 HOXC5Q00444 222 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SMN1Q16637 294 aaKnown RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 SAMD14Q8IZD0 417 aaPredicted RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 RLN3Q8WXF3 142 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 TAMM41Q96BW9 452 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CAMK1GQ96NX5 476 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 P2RY12Q9H244 342 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SPATA2Q9UM82 520 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 PPIEQ9UNP9 301 aaKnown RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 RNF6Q9Y252 685 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 LCKP06239 509 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ZNF26P17031 533 aaPredicted RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 C5AR1P21730 350 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SHMT2P34897 504 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 NCS1P62166 190 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 IL18R1Q13478 541 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SLC5A12Q1EHB4 618 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 ANKRD33Q7Z3H0 272 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 FAM220AQ7Z4H9 259 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 DCP2Q8IU60 420 aaKnown RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 IQCF1Q8N6M8 205 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 Q8N9G6 341 aaPredicted RBP14.32□□□□□ -0.12
CUX1-214ENST00000550008 OR4K14Q8NGD5 310 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 OR51A7Q8NH64 312 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 FATE1Q969F0 183 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 PIP5K1AQ99755 562 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 FUNDC2Q9BWH2 189 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 GSDMCQ9BYG8 508 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 SLITRK2Q9H156 845 aa14.32□□□□□ -0.12
CUX1-214ENST00000550008 CCDC182A6NF36 153 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 SLC22A1O15245 554 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 PRLHRP49683 370 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 MZT2AQ6P582 158 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 C11orf88Q6PI97 169 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 ZSWIM9Q86XI8 627 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 OR5M3Q8NGP4 307 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms