RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 RNF4P78317 190 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 FOXO1Q12778 655 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TBL3Q12788 808 aaKnown RBP11.9□□□□□ -0.5
PTCH1-218ENST00000548945 BIKQ13323 160 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 LAPTM5Q13571 262 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 E2F2Q14209 437 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TBCCQ15814 346 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 PDK4Q16654 411 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 MPEG1Q2M385 716 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 C18orf21Q32NC0 220 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-218ENST00000548945 PAGE2BQ5JRK9 111 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 SULT1C3Q6IMI6 304 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 GPSM1Q86YR5 675 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TMEM251Q8N6I4 163 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 FBXO36Q8NEA4 188 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 SLC2A12Q8TD20 617 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TSPAN17Q96FV3 270 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 CAPZA3Q96KX2 299 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 PWWP2AQ96N64 755 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TMEM79Q9BSE2 394 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 TBCDQ9BTW9 1192 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 OR8D2Q9GZM6 311 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 LIN28AQ9H9Z2 209 aaKnown RBP11.9□□□□□ -0.5
PTCH1-218ENST00000548945 WWOXQ9NZC7 414 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 COPS7AQ9UBW8 275 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 SPACA6W5XKT8 324 aa11.9□□□□□ -0.5
PTCH1-218ENST00000548945 NCKAP5O14513 1909 aa11.9□□□□□ -0.51
PTCH1-218ENST00000548945 NCF1BA6NI72 391 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-218ENST00000548945 NCF1CA8MVU1 366 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-218ENST00000548945 C17orf105B2RV13 164 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 TAPBPO15533 448 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 PRAMEF4O60810 478 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 SCELO95171 688 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 P04436 131 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 GLI4P10075 376 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 NCF1P14598 390 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-218ENST00000548945 MAGEA5P43359 124 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 ATP6V0D1P61421 351 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 DR1Q01658 176 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 DOC2AQ14183 400 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 SLC10A1Q14973 349 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 HIST2H2ACQ16777 129 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-218ENST00000548945 ZNF750Q32MQ0 723 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 TMEM35AQ53FP2 167 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 PRAMEF9Q5VWM5 478 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 HIST2H2AA3Q6FI13 130 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 FAM47EQ6ZV65 393 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 TMEM200AQ86VY9 491 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 ANKMY2Q8IV38 441 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 PDPRQ8NCN5 879 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 OR5M9Q8NGP3 310 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 NUBPLQ8TB37 319 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 UBE2E3Q969T4 207 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 SARAFQ96BY9 339 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 F2RL3Q96RI0 385 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 PTBP2Q9UKA9 531 aaKnown RBP11.89□□□□□ -0.51
PTCH1-218ENST00000548945 PCDHGB3Q9Y5G1 929 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 FAM215AQ9Y5M1 114 aa11.89□□□□□ -0.51
PTCH1-218ENST00000548945 VPS13CQ709C8 3753 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 FAM221AA4D161 298 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 TP73O15350 636 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 KRT38O76015 456 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ZWINTO95229 277 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 CCDC166P0CW27 439 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 COX7A2P14406 83 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 TNNI3P19429 210 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 CD22P20273 847 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 HIST1H1TP22492 207 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ATP5A1P25705 553 aaKnown RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 SERPINB1P30740 379 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 DNAJA1P31689 397 aaKnown RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 PEX19P40855 299 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 HSPA7P48741 367 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 MAN2A2P49641 1150 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ART1P52961 327 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 IGLV3-21P80748 117 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 PDIA2Q13087 525 aaKnown RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 MYBPHQ13203 477 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 FASTKD3Q14CZ7 662 aaKnown RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 SLC25A35Q3KQZ1 300 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 PIGGQ5H8A4 983 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 WLSQ5T9L3 541 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 RTL6Q6ICC9 239 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ADNP2Q6IQ32 1131 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ZNF585AQ6P3V2 769 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ZNF793Q6ZN11 406 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 UBE3DQ7Z6J8 389 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 DND1Q8IYX4 353 aaKnown RBP11.88□□□□□ -0.51
PTCH1-218ENST00000548945 SLC15A4Q8N697 577 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ZNF321PQ8N8H1 164 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ACOT4Q8N9L9 421 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 SNX31Q8N9S9 440 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 OR10Q1Q8NGQ4 319 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ZNF721Q8TF20 911 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 NINJ1Q92982 152 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 MS4A8Q9BY19 250 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 SH2D2AQ9NP31 389 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ACAD8Q9UKU7 415 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 ATG4BQ9Y4P1 393 aa11.88□□□□□ -0.51
PTCH1-218ENST00000548945 LIPGQ9Y5X9 500 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms