RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PNMA8BQ9ULN7 279 aaPredicted RBP17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 KLHL33A6NCF5 533 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 LINC01565O15544 149 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 MRPS14O60783 128 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 SERPIND1P05546 499 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 CEACAM5P06731 702 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 PSMB9P28065 219 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 HMGA2P52926 109 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 FOXD4Q12950 439 aaPredicted RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 DGCR6Q14129 220 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 MAPK11Q15759 364 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 C6orf120Q7Z4R8 191 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 CCDC103Q8IW40 242 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 SLC44A2Q8IWA5 706 aaPredicted RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 PARP8Q8N3A8 854 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 SVOPQ8N4V2 548 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 APOBEC4Q8WW27 367 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 NEUROD4Q9HD90 331 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 A4GALTQ9NPC4 353 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 RHCGQ9UBD6 479 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 OR52A4PA6NMU1 304 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 MAGEB3O15480 346 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 GADD45GO95257 159 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 STATHP02808 62 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 POU2F1P14859 743 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 RAB28P51157 221 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 ADPRMQ3LIE5 342 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 OR4C11Q6IEV9 310 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 SYCE2Q6PIF2 218 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 P3H2Q8IVL5 708 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 NATD1Q8N6N6 113 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 RHOXF1Q8NHV9 184 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 TMEM19Q96HH6 336 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 C1QTNF2Q9BXJ5 285 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 PBX4Q9BYU1 374 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 MKRN2Q9H000 416 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 BTBD1Q9H0C5 482 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 SLC6A17Q9H1V8 727 aa17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 DDX31Q9H8H2 851 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 FAM32AQ9Y421 112 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-208ENST00000548436 A0A0A6YYD5 115 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 LRIT2A6NDA9 550 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 EPOPA6NHQ4 379 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 CCDC85CA6NKD9 419 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 WASHC1A8K0Z3 465 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 A8MVJ9 347 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 K7EQS6 105 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 HMGN4O00479 90 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 FFAR1O14842 300 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 LCKP06239 509 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 TFPTP0C1Z6 253 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 RHCEP18577 417 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 KIR2DL1P43626 348 aaPredicted RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 LIM2P55344 173 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 MVKQ03426 396 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ITPRIPL2Q3MIP1 535 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 WASH2PQ6VEQ5 465 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 RAB42Q8N4Z0 105 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 SLC15A4Q8N697 577 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 C17orf62Q9BQA9 187 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 TIMM29Q9BSF4 260 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 SERHL2Q9H4I8 314 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 KLHL31Q9H511 634 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 FBXL12Q9NXK8 326 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 GALNT8Q9NY28 637 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF226Q9NYT6 803 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ADAM29Q9UKF5 820 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 CORINQ9Y5Q5 1042 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 TICRRQ7Z2Z1 1910 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 A0A1W2PQU0 124 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 C5orf58C9J3I9 102 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 SCAMP1O15126 338 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 CLEC3AO75596 197 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 IFNW1P05000 195 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 HOXB3P14651 431 aaPredicted RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 PKLRP30613 574 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 IDH2P48735 452 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 C21orf59P57076 290 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 LSM3P62310 102 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 RPS21P63220 83 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 CSNK2BP67870 215 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 SGCGQ13326 291 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 TMED1Q13445 227 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 SPDYE7PQ495Y7 208 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF776Q68DI1 518 aaPredicted RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF793Q6ZN11 406 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 NUDT18Q6ZVK8 323 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 GPR32P1Q8NGA4 272 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 OR14C36Q8NHC7 312 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 NDNFQ8TB73 568 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 GANCQ8TET4 914 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 GTPBP3Q969Y2 492 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 ZBED6CLQ96FA7 236 aaPredicted RBP17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 PLEKHA8Q96JA3 519 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 MACROD1Q9BQ69 325 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 DPH7Q9BTV6 452 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 AMBNQ9NP70 447 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 FZD3Q9NPG1 666 aa17.59■□□□□ 0.41
PRPF40B-208ENST00000548436 PSORS1C1Q9UIG5 152 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms