RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SFRP4Q6FHJ7 346 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 WASH2PQ6VEQ5 465 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PAQR9Q6ZVX9 377 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 RAD51AP1Q96B01 352 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 YIPF4Q9BSR8 244 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 NPAP1Q9NZP6 1156 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 OSGIN1Q9UJX0 560 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LDB2O43679 373 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SRPRAP08240 638 aaKnown RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SLC35G4P0C7Q5 338 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ELFN1P0C7U0 828 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 MARCH8Q5T0T0 291 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SLX4IPQ5VYV7 408 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LYPD8Q6UX82 237 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ARHGAP12Q8IWW6 846 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PPP1R14AQ96A00 147 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 APIPQ96GX9 242 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 GPR52Q9Y2T5 361 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PCDH17O14917 1159 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 UGT2B10P36537 528 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 NRIP1P48552 1158 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 FADDQ13158 208 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 MS4A13Q5J8X5 152 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 SLITRK4Q8IW52 837 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 NAGSQ8N159 534 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 FERD3LQ96RJ6 166 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 BRINP2Q9C0B6 783 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 STRCQ7RTU9 1775 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 IRGMA1A4Y4 181 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF780AO75290 641 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 MTHFD2P13995 350 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CBLP22681 906 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 BMPR1AP36894 532 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 PSMD4P55036 377 aaKnown RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CDH11P55287 796 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 LARS2Q15031 903 aaKnown RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 BAK1Q16611 211 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 KDELC1Q6UW63 502 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 GLCCI1Q86VQ1 547 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 COMMD2Q86X83 199 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 RIMKLAQ8IXN7 391 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 TP53I13Q8NBR0 393 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 ARL6Q9H0F7 186 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 NLE1Q9NVX2 485 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 AXIN1O15169 862 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CAPN5O15484 640 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 B3GALT4O96024 378 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 TACR1P25103 407 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 LEXMQ3ZCV2 418 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CDKL4Q5MAI5 379 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CEACAM20Q6UY09 585 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 HEBP1Q9NRV9 189 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 FAM120CQ9NX05 1096 aaKnown RBP13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CFAP97Q9P2B7 532 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 EDARQ9UNE0 448 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 CACNA1CQ13936 2221 aa13.65□□□□□ -0.22
LIMS1-215ENST00000544547 RAB36O95755 333 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 F2P00734 622 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 CORO1AP31146 461 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 IFITM2Q01629 132 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 IRAK1BP1Q5VVH5 260 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 B3GLCTQ6Y288 498 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 KLHL36Q8N4N3 616 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 FKBP10Q96AY3 582 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ZNF419Q96HQ0 510 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ABCA3Q99758 1704 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 A0A0G2JN53 185 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PEPDP12955 493 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 CDKN2CP42773 168 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PSMA6P60900 246 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PCBP2Q15366 365 aaKnown RBP eCLIP13.64□□□□□ -0.234e-7■■■■□ 22.4
LIMS1-215ENST00000544547 BPHLQ86WA6 291 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 RNF175Q8N4F7 328 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 CELF5Q8N6W0 485 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 BOLLQ8N9W6 283 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 RPLP0P6Q8NHW5 317 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 IGSF8Q969P0 613 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PPA2Q9H2U2 334 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 KIAA1522Q9P206 1035 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 FBXL21Q9UKT6 434 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 SCN9AQ15858 1988 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 DNAJC25-GNG10A0A024R161 153 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 DAPL1A0PJW8 107 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ECDO95905 644 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 HRGP04196 525 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 HTR1AP08908 422 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ARSBP15848 533 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 RPL3P39023 403 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 RPS26P62854 115 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 CHRNA6Q15825 494 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 LYPLAL1Q5VWZ2 237 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PM20D1Q6GTS8 502 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 PDZD3Q86UT5 571 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 BRI3BPQ8WY22 251 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 RFKQ969G6 155 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 NARFLQ9H6Q4 476 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ERVW-1Q9UQF0 538 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 DUSP11O75319 330 aaKnown RBP13.64□□□□□ -0.23
LIMS1-215ENST00000544547 HNMTP50135 292 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 SMSP52788 366 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms