RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PRMT7Q9NVM4 692 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 PCDHA6Q9UN73 950 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 A0A1B0GTW7 788 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 A0A1W2PRB8 838 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF487B1APH4 448 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 E5RJQ4 531 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 CFLARO15519 480 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 NRP2O60462 931 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 MSX2P35548 267 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 FKBP3Q00688 224 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 PTGR1Q14914 329 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 QPRTQ15274 297 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ARHGAP11BQ3KRB8 267 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 SCGB2B2Q4G0G5 96 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF484Q5JVG2 852 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 LHFPL4Q7Z7J7 247 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ABI1Q8IZP0 508 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 EIF4E3Q8N5X7 224 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 OR7G3Q8NG95 312 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 OR6K3Q8NGY3 331 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 PPP1R13LQ8WUF5 828 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 DLG3Q92796 817 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 SEMA4DQ92854 862 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 FCRL3Q96P31 734 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 FAM193BQ96PV7 902 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 TWNKQ96RR1 684 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZSWIM1Q9BR11 485 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 AMNQ9BXJ7 453 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 RPF1Q9H9Y2 349 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 POLR1BQ9H9Y6 1135 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ACOXLQ9NUZ1 547 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 MED17Q9NVC6 651 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 SH3BP4Q9P0V3 963 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 NDRG3Q9UGV2 375 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 SF3B1O75533 1304 aaKnown RBP eCLIP8.53□□□□□ -1.043e-6■■■■■ 173.5
VPS13D-212ENST00000543766 TMEM82A0PJX8 343 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF716A6NP11 495 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 FAM171A2A8MVW0 826 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 BCKDKO14874 412 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 DLEU1O43261 78 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 RGS14O43566 566 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF735P0CB33 412 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ME2P23368 584 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 THBS2P35442 1172 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 IMPG1Q17R60 797 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 Q5BKY6 102 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ZNF667Q5HYK9 610 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ANKRD22Q5VYY1 191 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ADAT2Q7Z6V5 191 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ALYREFQ86V81 257 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 RANBP3LQ86VV4 465 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 LDHDQ86WU2 507 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 CFAP206Q8IYR0 622 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 OR1N1Q8NGS0 311 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 LINC00052Q96N35 136 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 FYTTD1Q96QD9 318 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 HBEGFQ99075 208 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 GAD1Q99259 594 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 POP1Q99575 1024 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 MS4A5Q9H3V2 200 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 GDE1Q9NZC3 331 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 PTRH2Q9Y3E5 179 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 HSPE1-MOB4S4R3N1 261 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 BAZ2AQ9UIF9 1905 aaKnown RBP8.53□□□□□ -1.04
VPS13D-212ENST00000543766 ASTN1O14525 1302 aa8.53□□□□□ -1.04
VPS13D-212ENST00000543766 TRBV2A0A0J9YWF9 115 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 TMEM150BA6NC51 233 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 RFPL1O75677 317 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 CH25HO95992 272 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 ALDOAP04075 364 aaKnown RBP8.52□□□□□ -1.04
VPS13D-212ENST00000543766 MAGEA2P43356 314 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 MARCKSL1P49006 195 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 NUDT6P53370 316 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 OGDHQ02218 1023 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 GPM6BQ13491 265 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 GK2Q14410 553 aaPredicted RBP8.52□□□□□ -1.04
VPS13D-212ENST00000543766 BATFQ16520 125 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 PHYHD1Q5SRE7 291 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 TRIQKQ629K1 86 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 TMEM88Q6PEY1 159 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 METTL7BQ6UX53 244 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 CHSY1Q86X52 802 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 VRK2Q86Y07 508 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 C12orf76Q8N812 135 aaPredicted RBP8.52□□□□□ -1.04
VPS13D-212ENST00000543766 C9orf43Q8TAL5 461 aaPredicted RBP8.52□□□□□ -1.04
VPS13D-212ENST00000543766 AURKBQ96GD4 344 aaPredicted RBP8.52□□□□□ -1.04
VPS13D-212ENST00000543766 RHOFQ9HBH0 211 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 CNIH4Q9P003 139 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 CLCA2Q9UQC9 943 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 ERVW-1Q9UQF0 538 aa8.52□□□□□ -1.04
VPS13D-212ENST00000543766 ARHGEF33A8MVX0 844 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 WDR64B1ANS9 1081 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 SIAH2O43255 324 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 PAGE1O75459 146 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 CREG1O75629 220 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 NCR1O76036 304 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 GADD45GO95257 159 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 NR2F1P10589 423 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 DRD2P14416 443 aa8.52□□□□□ -1.05
VPS13D-212ENST00000543766 GLRA1P23415 457 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms