RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SLBPQ14493 270 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 DAZAP2Q15038 168 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 HSPB2Q16082 182 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 CYP1B1Q16678 543 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 DEFB113Q30KQ7 82 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF791Q3KP31 576 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 FBXL19-AS1Q494R0 122 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 SPANXN3Q5MJ09 141 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 TEDDM1Q5T9Z0 273 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 RNASEH2BQ5TBB1 312 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 FAM45BPQ6NSW5 357 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ABHD17CQ6PCB6 329 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 CCDC137Q6PK04 289 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 PPIL6Q8IXY8 311 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 TNIP2Q8NFZ5 429 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 TTLQ8NG68 377 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 FAM45AQ8TCE6 357 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF721Q8TF20 911 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 REXO4Q9GZR2 422 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 PROK2Q9HC23 129 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 PCDHGB3Q9Y5G1 929 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 FN1P02751 2386 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 A0A088AWK7 358 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 SYNDIG1LA6NDD5 238 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 LRRC3CA6NJW4 275 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 PRAMEF4O60810 478 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 CLEC3AO75596 197 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 WDR47O94967 919 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 TTC4O95801 387 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 GNAZP19086 355 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF10P21506 573 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 BMP5P22003 454 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 TACR1P25103 407 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 CEACAM8P31997 349 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 SLC6A12P48065 614 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 MTTPP55157 894 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 WNT3P56703 355 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 CDKL1Q00532 357 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 ASPHQ12797 758 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 STX4Q12846 297 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 MPEG1Q2M385 716 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 PIGGQ5H8A4 983 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 PRAMEF9Q5VWM5 478 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 TRIM40Q6P9F5 258 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 LYPD8Q6UX82 237 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 KRTAP1-3Q8IUG1 177 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 FBXW8Q8N3Y1 598 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 RASGEF1CQ8N431 466 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 GABPB2Q8TAK5 448 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 RNASE6Q93091 150 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 MS4A14Q96JA4 679 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 SLC6A15Q9H2J7 730 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 NT5DC2Q9H857 520 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 PRDM7Q9NQW5 492 aa16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 CORO1CQ9ULV4 474 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-214ENST00000542663 H2AFYO75367 372 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 GSTM2P28161 218 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 CDC25BP30305 580 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 HOXC12P31275 282 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 EFTUD2Q15029 972 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 PRAMEF20Q5VT98 475 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 SLC22A10Q63ZE4 541 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF662Q6ZS27 426 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 C9orf40Q8IXQ3 194 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 LRRC25Q8N386 305 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 TRIM58Q8NG06 486 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 OR5L2Q8NGL0 311 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 NEIL3Q8TAT5 605 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 PAQR8Q8TEZ7 354 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 C18orf12Q96KH6 178 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 CAPZA3Q96KX2 299 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 EGFL8Q99944 293 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 PLEKHF2Q9H8W4 249 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF490Q9ULM2 529 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 OARD1Q9Y530 152 aa16.4■□□□□ 0.22
CLSTN3-214ENST00000542663 ANKDD1BA6NHY2 528 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 DVL2O14641 736 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 TNNI3P19429 210 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 HNMTP50135 292 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ID2Q02363 134 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ZNF460Q14592 562 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 TRMT10BQ6PF06 316 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ZNF793Q6ZN11 406 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ANKRD7Q92527 254 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ANKRD9Q96BM1 317 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 RHBDF1Q96CC6 855 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 F2RL3Q96RI0 385 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 MAPKAP1Q9BPZ7 522 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 COPS7BQ9H9Q2 264 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ZFP64Q9NPA5 681 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 ACKR4Q9NPB9 350 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 MED12LQ86YW9 2145 aa16.39■□□□□ 0.21
CLSTN3-214ENST00000542663 EPPINO95925 133 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 IGKV3-11P04433 115 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 TRPC1P48995 793 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 ZNF136P52737 540 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 KCNJ2P63252 427 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 SERTAD2Q14140 314 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 KEAP1Q14145 624 aa16.38■□□□□ 0.21
CLSTN3-214ENST00000542663 RCN2Q14257 317 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms