RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 HMGA2P52926 109 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 TMBIM6P55061 237 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 NPRL3Q12980 569 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 SIM2Q14190 667 aaPredicted RBP13.08□□□□□ -0.31
RTN3-210ENST00000540798 MAPK11Q15759 364 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 PLD3Q8IV08 490 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 HORMAD2Q8N7B1 307 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 CNIH3Q8TBE1 160 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 SPPL2AQ8TCT8 520 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 MAGED4Q96JG8 741 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 MSLNLQ96KJ4 702 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 OR2M4Q96R27 311 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 MYOCQ99972 504 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 DUSP21Q9H596 190 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 MRPS30Q9NP92 439 aaKnown RBP13.08□□□□□ -0.31
RTN3-210ENST00000540798 EXD2Q9NVH0 621 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 PRAMEF33A0A0G2JMD5 474 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 ATE1O95260 518 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 ITGA2P17301 1181 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 TNFRSF1BP20333 461 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 EPHA2P29317 976 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 MAT2AP31153 395 aaKnown RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 MANFP55145 182 aaKnown RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 GPR107Q5VW38 600 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 MRM1Q6IN84 353 aaKnown RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 ZNF425Q6IV72 752 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 REEP3Q6NUK4 255 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 FAM180BQ6P0A1 224 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 APOL4Q9BPW4 351 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 LHPPQ9H008 270 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 KIF17Q9P2E2 1029 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 PCOLCE2Q9UKZ9 415 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 GMPPBQ9Y5P6 360 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 SZT2Q5T011 3432 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 TNFRSF11BO00300 401 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 HAT1O14929 419 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 PRAMEF10O60809 474 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 TFPTP0C1Z6 253 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 IL5RAQ01344 420 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 MAD2L1BPQ15013 274 aaPredicted RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 TRIM69Q86WT6 500 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 FBXL6Q8N531 539 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 ATG16L2Q8NAA4 619 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 ZBTB8BQ8NAP8 495 aaPredicted RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 MS4A6EQ96DS6 147 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 ZBED6CLQ96FA7 236 aaPredicted RBP13.08□□□□□ -0.32
RTN3-210ENST00000540798 HRASLS5Q96KN8 279 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 KLHL31Q9H511 634 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 KLF15Q9UIH9 416 aa13.08□□□□□ -0.32
RTN3-210ENST00000540798 POM121BA6NF01 834 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 PPM1DO15297 605 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 ANGPTL1O95841 491 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 CYP4B1P13584 511 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 CD247P20963 164 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 LTBRP36941 435 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SLC35A2P78381 396 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 CEACAM20Q6UY09 585 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 GIPC3Q8TF64 312 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 UCN3Q969E3 161 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 DPH7Q9BTV6 452 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 RSPO3Q9BXY4 272 aaPredicted RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 NAA50Q9GZZ1 169 aaKnown RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 RUBCNLQ9H714 662 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 PRDM7Q9NQW5 492 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SPHK1Q9NYA1 384 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 PAIP2BQ9ULR5 123 aaKnown RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 TESMINQ9Y4I5 508 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 PDZK1P1A8MUH7 402 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SLC31A1O15431 190 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 NDUFS2O75306 463 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 CDK4P11802 303 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 ACVR2AP27037 513 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 ALDH9A1P49189 494 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 NUP107P57740 925 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 MRPS21P82921 87 aaKnown RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 MLLT1Q03111 559 aaPredicted RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 NFATC4Q14934 902 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 MICAQ29983 383 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 C6orf120Q7Z4R8 191 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SLC38A5Q8WUX1 472 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 OR1E3Q8WZA6 343 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SIPA1Q96FS4 1042 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 NODALQ96S42 347 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SERHL2Q9H4I8 314 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SYNPO2LQ9H987 977 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 C5AR2Q9P296 337 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 TBC1D29Q9UFV1 150 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 KCND3Q9UK17 655 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 ASB4Q9Y574 426 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SNX11Q9Y5W9 270 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 SNX8Q9Y5X2 465 aa13.07□□□□□ -0.32
RTN3-210ENST00000540798 MDC1Q14676 2089 aaKnown RBP13.07□□□□□ -0.32
RTN3-210ENST00000540798 HMGN4O00479 90 aa13.06□□□□□ -0.32
RTN3-210ENST00000540798 MRPS14O60783 128 aaKnown RBP13.06□□□□□ -0.32
RTN3-210ENST00000540798 HOXB3P14651 431 aaPredicted RBP13.06□□□□□ -0.32
RTN3-210ENST00000540798 DRD1P21728 446 aa13.06□□□□□ -0.32
RTN3-210ENST00000540798 OR1E2P47887 323 aa13.06□□□□□ -0.32
RTN3-210ENST00000540798 RPP38P78345 283 aaKnown RBP13.06□□□□□ -0.32
RTN3-210ENST00000540798 ABHD17CQ6PCB6 329 aa13.06□□□□□ -0.32
RTN3-210ENST00000540798 MFSD9Q8NBP5 474 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms