RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 OR14A16Q8NHC5 309 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 MBD3L2Q8NHZ7 208 aaPredicted RBP10.63□□□□□ -0.71
RNF4-216ENST00000511859 PAQR8Q8TEZ7 354 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 FAR2Q96K12 515 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 NAPGQ99747 312 aaPredicted RBP10.63□□□□□ -0.71
RNF4-216ENST00000511859 WDR83Q9BRX9 315 aaKnown RBP10.63□□□□□ -0.71
RNF4-216ENST00000511859 KLHL31Q9H511 634 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 SH2D2AQ9NP31 389 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 EIF2B3Q9NR50 452 aaKnown RBP10.63□□□□□ -0.71
RNF4-216ENST00000511859 CNIH4Q9P003 139 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 VTI1BQ9UEU0 232 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 PDE10AQ9Y233 779 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 MED16Q9Y2X0 877 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 COMMD10Q9Y6G5 202 aa10.63□□□□□ -0.71
RNF4-216ENST00000511859 MED12Q93074 2177 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 CTAGE9A4FU28 777 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 C1QAP02745 245 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 HIST1H2AGP0C0S8 130 aaPredicted RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 PAMP19021 973 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 HIST1H2ADP20671 130 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 CASQ1P31415 396 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 TRPC1P48995 793 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 ETF1P62495 437 aaKnown RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 BTN3A2P78410 334 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 DMTNQ08495 405 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 RUNX2Q13950 521 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 OASLQ15646 514 aaKnown RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 ZNF791Q3KP31 576 aaPredicted RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 DUPD1Q68J44 220 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 NEPROQ6NW34 567 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 ADGRD1Q6QNK2 874 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 CES3Q6UWW8 571 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 PIWIL4Q7Z3Z4 852 aaKnown RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 HIPK1Q86Z02 1210 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.62□□□□□ -0.713e-6■■■■■ 69.6
RNF4-216ENST00000511859 DND1Q8IYX4 353 aaKnown RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 SLC15A4Q8N697 577 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 PPP1R14CQ8TAE6 165 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 PTPMT1Q8WUK0 201 aaPredicted RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 MS4A14Q96JA4 679 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 HIST1H2AHQ96KK5 128 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 OSBPL9Q96SU4 736 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 HIST1H2AJQ99878 128 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 H2AFJQ9BTM1 129 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 FRMD8P1Q9BZ68 369 aaPredicted RBP10.62□□□□□ -0.71
RNF4-216ENST00000511859 GALNT8Q9NY28 637 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 PAK5Q9P286 719 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 SOX13Q9UN79 622 aa10.62□□□□□ -0.71
RNF4-216ENST00000511859 TGFBR3LH3BV60 316 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CTNSO60931 367 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 TMIGD3P0DMS9 266 aaPredicted RBP10.61□□□□□ -0.71
RNF4-216ENST00000511859 PAX1P15863 534 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 RPL22P35268 128 aaKnown RBP10.61□□□□□ -0.71
RNF4-216ENST00000511859 MC3RP41968 323 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CPA2P48052 419 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 PTH2RP49190 550 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 RAB38P57729 211 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 STXBP1P61764 594 aaKnown RBP10.61□□□□□ -0.71
RNF4-216ENST00000511859 EEF1A1P68104 462 aaKnown RBP10.61□□□□□ -0.71
RNF4-216ENST00000511859 KRTAP1-1Q07627 177 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 SP140Q13342 867 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CTBP1Q13363 440 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 EEF1A1P5Q5VTE0 462 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 ARMC3Q5W041 872 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 VASNQ6EMK4 673 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 MBOAT1Q6ZNC8 495 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CPNE9Q8IYJ1 553 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CCDC89Q8N998 374 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 C7orf57Q8NEG2 295 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 OR56A3Q8NH54 315 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 SLC22A8Q8TCC7 542 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CD200R1Q8TD46 325 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 ZFP3Q96NJ6 502 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 TRIB1Q96RU8 372 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 GPR21Q99679 349 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 SFXN3Q9BWM7 321 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 ALOXE3Q9BYJ1 711 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 OR8D2Q9GZM6 311 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 UBTD1Q9HAC8 227 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 PROK2Q9HC23 129 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 ZNF226Q9NYT6 803 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 COPS7AQ9UBW8 275 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 SNX12Q9UMY4 172 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 CAMK2AQ9UQM7 478 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 IKBKGQ9Y6K9 419 aa10.61□□□□□ -0.71
RNF4-216ENST00000511859 RAI1Q7Z5J4 1906 aaPredicted RBP10.6□□□□□ -0.71
RNF4-216ENST00000511859 A0A088AWK7 358 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 LRRC3CA6NJW4 275 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 CTIFO43310 598 aaKnown RBP10.6□□□□□ -0.71
RNF4-216ENST00000511859 TLX2O43763 284 aaPredicted RBP10.6□□□□□ -0.71
RNF4-216ENST00000511859 LIASO43766 372 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 FGGP02679 453 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 TNNI3P19429 210 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 ZNF10P21506 573 aaPredicted RBP10.6□□□□□ -0.71
RNF4-216ENST00000511859 MGAT1P26572 445 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 GDF1P27539 372 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 PCYT1AP49585 367 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 RGS4P49798 205 aa10.6□□□□□ -0.71
RNF4-216ENST00000511859 HNRNPFP52597 415 aaKnown RBP10.6□□□□□ -0.71
RNF4-216ENST00000511859 DIO3P55073 304 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms