RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IER5LQ5T953 404 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 UBE2UQ5VVX9 321 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 C16orf87Q6PH81 154 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 ZNF605Q86T29 641 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 KRT73Q86Y46 540 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 SFTPA1Q8IWL2 248 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 SLC5A8Q8N695 610 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 ZNF513Q8N8E2 541 aaPredicted RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 SRFBP1Q8NEF9 429 aaKnown RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 MOAP1Q96BY2 351 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 YIPF6Q96EC8 236 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 F2RL3Q96RI0 385 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 SPATA5L1Q9BVQ7 753 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 LGR4Q9BXB1 951 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 HMG20AQ9NP66 347 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 P2RX2Q9UBL9 471 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 KCND3Q9UK17 655 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 RAB23Q9ULC3 237 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 TMCC3Q9ULS5 477 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 RNF6Q9Y252 685 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 PCYT1BQ9Y5K3 369 aaPredicted RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 SH3D21A4FU49 640 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 H7BY64 318 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 M0R3G1 203 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PCDHGA12O60330 932 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PFDN1O60925 122 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 WBP4O75554 376 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 FADS2O95864 444 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 ADAP00813 363 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 ACP5P13686 325 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 ACVR2AP27037 513 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PSMB9P28065 219 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 AHRP35869 848 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SSR2P43308 183 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 LIMS1P48059 325 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 KHKP50053 298 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CSNK1G2P78368 415 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 OLR1P78380 273 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PIGFQ07326 219 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SFSWAPQ12872 951 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 CTF1Q16619 201 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 LEXMQ3ZCV2 418 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 FBXO43Q4G163 708 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 COLEC12Q5KU26 742 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 OR4C11Q6IEV9 310 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SDE2Q6IQ49 451 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 KLHL35Q6PF15 583 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TMEM64Q6YI46 380 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CCDC81Q6ZN84 652 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 ADCK2Q7Z695 626 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TSEN54Q7Z6J9 526 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 ADGRF3Q8IZF5 1079 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 LINC00471Q8N535 108 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 C9orf43Q8TAL5 461 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 SFXN5Q8TD22 340 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SLC35G5Q96KT7 338 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CAMK1GQ96NX5 476 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PRAP1Q96NZ9 151 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 KCNC2Q96PR1 638 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TEFMQ96QE5 360 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 SIGLEC11Q96RL6 698 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 COPS4Q9BT78 406 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SORBS1Q9BX66 1292 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 C1QTNF2Q9BXJ5 285 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 ITPAQ9BY32 194 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 OSGEPL1Q9H4B0 414 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 RASSF1Q9NS23 344 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SEMA3GQ9NS98 782 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TMEM184CQ9NVA4 438 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SCML1Q9UN30 329 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SLC17A4Q9Y2C5 497 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 HEMK1Q9Y5R4 338 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 A0A0A6YYD5 115 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PRAMEF33A0A0G2JMD5 474 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 A0A1W2PP55 124 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 OR2A25A4D2G3 310 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 PLRG1O43660 514 aaKnown RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 PRAMEF10O60809 474 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CBFA2T3O75081 653 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TBX6O95947 436 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 BCHEP06276 602 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CD247P20963 164 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 CBLP22681 906 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 NDUFS1P28331 727 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 MAPK10P53779 464 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TGM3Q08188 693 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 TMED1Q13445 227 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 AHSA2Q719I0 299 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 C6orf120Q7Z4R8 191 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 SLC44A2Q8IWA5 706 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 C2orf73Q8N5S3 287 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 LMNTD1Q8N9Z9 388 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 RHOXF1Q8NHV9 184 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 APH1BQ8WW43 257 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 ASB12Q8WXK4 309 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 FAM131CQ96AQ9 280 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 VMP1Q96GC9 406 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 INSM2Q96T92 566 aaPredicted RBP11.38□□□□□ -0.59
NUP54-202ENST00000502850 PREBQ9HCU5 417 aa11.38□□□□□ -0.59
NUP54-202ENST00000502850 MRPS30Q9NP92 439 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms